Protein : Qrob_P0330240.2 Q. robur
Protein Identifier  ? Qrob_P0330240.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF01782 - RimM N-terminal domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 668  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0043022 ribosome binding Interacting selectively and non-covalently with any part of a ribosome.
GO:0070569 uridylyltransferase activity Catalysis of the transfer of an uridylyl group to an acceptor.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103943546 2 667 + 666 Gaps:11 100.00 671 66.32 0.0 uncharacterized LOC103943546
blastp_kegg lcl|pmum:103325031 2 667 + 666 Gaps:10 100.00 668 67.22 0.0 uncharacterized LOC103325031
blastp_kegg lcl|fve:101308845 2 667 + 666 Gaps:28 100.00 654 66.67 0.0 uncharacterized protein LOC101308845
blastp_kegg lcl|mdm:103435124 65 667 + 603 Gaps:5 99.51 611 67.93 0.0 uncharacterized LOC103435124
blastp_kegg lcl|vvi:100251997 19 667 + 649 Gaps:6 97.59 665 65.18 0.0 uncharacterized LOC100251997
blastp_kegg lcl|tcc:TCM_029565 2 667 + 666 Gaps:9 100.00 665 62.26 0.0 16S rRNA processing protein RimM family putative isoform 1
blastp_kegg lcl|pop:POPTR_0001s34380g 2 667 + 666 Gaps:25 100.00 673 64.93 0.0 hypothetical protein
blastp_kegg lcl|cit:102610521 2 667 + 666 Gaps:14 100.00 668 62.57 0.0 uncharacterized LOC102610521
blastp_kegg lcl|cic:CICLE_v10014510mg 2 667 + 666 Gaps:14 100.00 668 62.43 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0634770 51 667 + 617 Gaps:7 98.89 631 62.02 0.0 hypothetical protein
blastp_pdb 2f1l_A 77 227 + 151 Gaps:21 79.14 187 34.46 4e-14 mol:protein length:187 16S rRNA processing protein
blastp_pdb 2yqs_A 342 582 + 241 Gaps:37 46.91 486 27.19 6e-09 mol:protein length:486 UDP-N-acetylglucosamine pyrophosphorylase
blastp_pdb 2yqj_B 342 582 + 241 Gaps:37 46.91 486 27.19 6e-09 mol:protein length:486 UDP-N-acetylglucosamine pyrophosphorylase
blastp_pdb 2yqj_A 342 582 + 241 Gaps:37 46.91 486 27.19 6e-09 mol:protein length:486 UDP-N-acetylglucosamine pyrophosphorylase
blastp_pdb 2yqh_B 342 582 + 241 Gaps:37 46.91 486 27.19 6e-09 mol:protein length:486 UDP-N-acetylglucosamine pyrophosphorylase
blastp_pdb 2yqh_A 342 582 + 241 Gaps:37 46.91 486 27.19 6e-09 mol:protein length:486 UDP-N-acetylglucosamine pyrophosphorylase
blastp_pdb 2yqc_A 342 582 + 241 Gaps:37 46.91 486 27.19 6e-09 mol:protein length:486 UDP-N-acetylglucosamine pyrophosphorylase
blastp_pdb 3h9n_A 80 269 + 190 Gaps:25 95.48 177 31.95 7e-09 mol:protein length:177 Ribosome maturation factor rimM
blastp_pdb 1jv3_B 395 582 + 188 Gaps:21 37.03 505 23.53 1e-08 mol:protein length:505 GlcNAc1P uridyltransferase isoform 1: AGX1
blastp_pdb 1jv3_A 395 582 + 188 Gaps:21 37.03 505 23.53 1e-08 mol:protein length:505 GlcNAc1P uridyltransferase isoform 1: AGX1
blastp_uniprot_sprot sp|B0CFM3|RIMM_ACAM1 59 268 + 210 Gaps:21 98.44 192 41.80 5e-36 Ribosome maturation factor RimM OS Acaryochloris marina (strain MBIC 11017) GN rimM PE 3 SV 1
blastp_uniprot_sprot sp|A5GI62|RIMM_SYNPW 73 270 + 198 Gaps:24 99.43 175 44.25 5e-35 Ribosome maturation factor RimM OS Synechococcus sp. (strain WH7803) GN rimM PE 3 SV 1
blastp_uniprot_sprot sp|B7K5W1|RIMM_CYAP8 77 271 + 195 Gaps:17 96.77 186 44.44 2e-34 Ribosome maturation factor RimM OS Cyanothece sp. (strain PCC 8801) GN rimM PE 3 SV 1
blastp_uniprot_sprot sp|B2J3X9|RIMM_NOSP7 50 271 + 222 Gaps:17 87.23 235 39.51 1e-33 Ribosome maturation factor RimM OS Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN rimM PE 3 SV 1
blastp_uniprot_sprot sp|A2CCX2|RIMM_PROM3 74 270 + 197 Gaps:24 98.30 176 42.20 1e-32 Ribosome maturation factor RimM OS Prochlorococcus marinus (strain MIT 9303) GN rimM PE 3 SV 2
blastp_uniprot_sprot sp|Q5N0Z1|RIMM_SYNP6 70 270 + 201 Gaps:23 97.80 182 46.07 1e-32 Ribosome maturation factor RimM OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN rimM PE 3 SV 1
blastp_uniprot_sprot sp|Q31KY0|RIMM_SYNE7 70 270 + 201 Gaps:23 97.80 182 46.07 1e-32 Ribosome maturation factor RimM OS Synechococcus elongatus (strain PCC 7942) GN rimM PE 3 SV 1
blastp_uniprot_sprot sp|Q7V4K0|RIMM_PROMM 74 270 + 197 Gaps:24 98.30 176 42.20 1e-32 Ribosome maturation factor RimM OS Prochlorococcus marinus (strain MIT 9313) GN rimM PE 3 SV 2
blastp_uniprot_sprot sp|Q8YTB1|RIMM_NOSS1 56 271 + 216 Gaps:17 80.89 246 40.20 2e-32 Probable 16S rRNA-processing protein RimM OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN rimM PE 3 SV 1
blastp_uniprot_sprot sp|Q0IDP0|RIMM_SYNS3 61 254 + 194 Gaps:24 90.91 187 43.53 8e-32 Ribosome maturation factor RimM OS Synechococcus sp. (strain CC9311) GN rimM PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 79 168 90 PF01782 none RimM N-terminal domain IPR002676
Pfam 456 585 130 PF01704 none UTP--glucose-1-phosphate uridylyltransferase IPR002618
Gene3D 177 267 91 G3DSA:2.30.30.240 none none none
Gene3D 298 585 288 G3DSA:3.90.550.10 none none IPR029044
Gene3D 595 665 71 G3DSA:3.90.550.10 none none IPR029044
SUPERFAMILY 298 665 368 SSF53448 none none IPR029044
TIGRFAM 78 267 190 TIGR02273 none 16S_RimM: 16S rRNA processing protein RimM IPR011961
Gene3D 71 171 101 G3DSA:2.40.30.60 none none IPR002676
SUPERFAMILY 177 267 91 SSF50346 none none IPR011033
SUPERFAMILY 77 171 95 SSF50447 none none IPR009000
Pfam 174 268 95 PF05239 none PRC-barrel domain IPR027275
PANTHER 447 582 136 PTHR11952 none none IPR002618

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 10 9

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting