Protein : Qrob_P0323590.2 Q. robur

Protein Identifier  ? Qrob_P0323590.2 Organism . Name  Quercus robur
Score  43.2 Score Type  egn
Protein Description  (M=2) K11665 - DNA helicase INO80 [EC:3.6.4.12] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 861  
Kegg Orthology  K11665

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

13 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0008483 transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
GO:0030170 pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0006338 chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
GO:0006807 nitrogen compound metabolic process The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
GO:0015930 glutamate synthase activity Catalysis of the formation of L-glutamine and 2-oxoglutarate from L-glutamate, using NADH, NADPH or ferredoxin as hydrogen acceptors.
GO:0031011 Ino80 complex A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100250397 293 553 + 261 Gaps:2 16.57 1563 86.87 1e-144 DNA helicase INO80-like
blastp_kegg lcl|tcc:TCM_024548 293 553 + 261 Gaps:2 16.86 1536 86.10 1e-144 Chromatin remodeling complex subunit isoform 1
blastp_kegg lcl|pop:POPTR_0006s04570g 293 556 + 264 Gaps:2 17.67 1483 83.97 1e-143 POPTRDRAFT_560465 transcriptional activator family protein
blastp_kegg lcl|mdm:103418898 317 553 + 237 none 28.66 827 89.03 2e-143 DNA helicase INO80-like
blastp_kegg lcl|pper:PRUPE_ppa000175mg 317 553 + 237 none 15.57 1522 91.98 1e-142 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s04280g 293 553 + 261 Gaps:2 16.87 1535 84.56 1e-142 POPTRDRAFT_576236 transcriptional activator family protein
blastp_kegg lcl|pmum:103342429 317 553 + 237 none 15.63 1516 91.98 1e-142 DNA helicase INO80
blastp_kegg lcl|rcu:RCOM_0424950 317 553 + 237 none 17.70 1339 89.87 2e-142 ATP binding protein putative (EC:2.7.11.1)
blastp_kegg lcl|fve:101305678 317 553 + 237 none 15.79 1501 92.83 3e-142 DNA helicase INO80-like
blastp_kegg lcl|mdm:103447981 317 553 + 237 none 15.71 1509 90.72 1e-141 DNA helicase INO80-like
blastp_pdb 3mwy_W 317 524 + 208 Gaps:16 24.00 800 38.54 3e-28 mol:protein length:800 Chromo domain-containing protein 1
blastp_pdb 1z6a_A 307 515 + 209 Gaps:17 40.00 500 32.00 1e-23 mol:protein length:500 Helicase of the snf2/rad54 family
blastp_pdb 1z63_B 307 515 + 209 Gaps:17 40.00 500 32.00 1e-23 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z63_A 307 515 + 209 Gaps:17 40.00 500 32.00 1e-23 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1wkh_B 721 851 + 131 Gaps:1 32.91 395 36.92 6e-23 mol:protein length:395 Acetylornithine/acetyl-lysine aminotransferas
blastp_pdb 1wkh_A 721 851 + 131 Gaps:1 32.91 395 36.92 6e-23 mol:protein length:395 Acetylornithine/acetyl-lysine aminotransferas
blastp_pdb 1wkg_B 721 851 + 131 Gaps:1 32.91 395 36.92 6e-23 mol:protein length:395 Acetylornithine/acetyl-lysine aminotransferas
blastp_pdb 1wkg_A 721 851 + 131 Gaps:1 32.91 395 36.92 6e-23 mol:protein length:395 Acetylornithine/acetyl-lysine aminotransferas
blastp_pdb 1vef_B 721 851 + 131 Gaps:1 32.91 395 36.92 6e-23 mol:protein length:395 Acetylornithine/acetyl-lysine aminotransferas
blastp_pdb 1vef_A 721 851 + 131 Gaps:1 32.91 395 36.92 6e-23 mol:protein length:395 Acetylornithine/acetyl-lysine aminotransferas
blastp_uniprot_sprot sp|Q8RXS6|INO80_ARATH 317 553 + 237 none 15.73 1507 85.65 4e-134 DNA helicase INO80 OS Arabidopsis thaliana GN INO80 PE 2 SV 2
blastp_uniprot_sprot sp|Q940M2|AGT21_ARATH 684 856 + 173 Gaps:10 38.45 476 76.50 3e-88 Alanine--glyoxylate aminotransferase 2 homolog 1 mitochondrial OS Arabidopsis thaliana GN AGT2 PE 1 SV 1
blastp_uniprot_sprot sp|Q4PGL2|INO80_USTMA 317 528 + 212 Gaps:1 11.05 1910 63.98 1e-81 Putative DNA helicase INO80 OS Ustilago maydis (strain 521 / FGSC 9021) GN INO80 PE 3 SV 1
blastp_uniprot_sprot sp|Q6ZPV2|INO80_MOUSE 324 526 + 203 Gaps:2 13.15 1559 64.39 2e-79 DNA helicase INO80 OS Mus musculus GN Ino80 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ULG1|INO80_HUMAN 324 526 + 203 Gaps:2 13.17 1556 64.39 2e-79 DNA helicase INO80 OS Homo sapiens GN INO80 PE 1 SV 2
blastp_uniprot_sprot sp|Q0UG82|INO80_PHANO 324 529 + 206 Gaps:5 12.37 1673 61.35 1e-73 Putative DNA helicase INO80 OS Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN INO80 PE 3 SV 2
blastp_uniprot_sprot sp|Q9VDY1|INO80_DROME 324 518 + 195 Gaps:3 12.09 1638 63.13 2e-73 Putative DNA helicase Ino80 OS Drosophila melanogaster GN Ino80 PE 1 SV 2
blastp_uniprot_sprot sp|A1C9W6|INO80_ASPCL 317 524 + 208 Gaps:4 12.30 1707 60.95 3e-73 Putative DNA helicase ino80 OS Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN ino80 PE 3 SV 1
blastp_uniprot_sprot sp|Q5BAZ5|INO80_EMENI 317 524 + 208 Gaps:4 13.03 1612 60.95 5e-73 Putative DNA helicase ino80 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN ino80 PE 3 SV 1
blastp_uniprot_sprot sp|Q4WTV7|INO80_ASPFU 317 523 + 207 Gaps:1 12.06 1708 61.17 6e-73 Putative DNA helicase ino80 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN ino80 PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 820 856 37 G3DSA:3.90.1150.10 none none IPR015422
SUPERFAMILY 439 519 81 SSF52540 none none IPR027417
PANTHER 323 525 203 PTHR10799 none none none
ProSitePatterns 748 786 39 PS00600 none Aminotransferases class-III pyridoxal-phosphate attachment site. IPR005814
ProSiteProfiles 266 392 127 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Gene3D 70 207 138 G3DSA:3.20.20.70 none none IPR013785
Pfam 327 511 185 PF00176 none SNF2 family N-terminal domain IPR000330
SUPERFAMILY 52 215 164 SSF51395 none none none
Gene3D 336 389 54 G3DSA:3.40.50.300 none none IPR027417
PANTHER 323 525 203 PTHR10799:SF213 none none IPR031047
Pfam 721 855 135 PF00202 none Aminotransferase class-III IPR005814
SUPERFAMILY 324 437 114 SSF52540 none none IPR027417
SUPERFAMILY 678 856 179 SSF53383 none none IPR015424
Gene3D 722 819 98 G3DSA:3.40.640.10 none none IPR015421
Pfam 53 194 142 PF04898 "UniPathway:UPA00045" Glutamate synthase central domain IPR006982

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting