Protein : Qrob_P0322160.2 Q. robur
Protein Identifier  ? Qrob_P0322160.2 Organism . Name  Quercus robur
Score  100.1 Score Type  egn
Protein Description  (M=8) KOG0054//KOG0055//KOG0056//KOG0057//KOG0058//KOG0060//KOG0061//KOG0062//KOG0065//KOG0927 - Multidrug resistance-associated protein/mitoxantrone resistance protein ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Multidrug/pheromone exporter ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Heavy metal exporter HMT1 ABC superfamily [Inorganic ion transport and metabolism]. // Mitochondrial Fe/S cluster exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Peptide exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Long-chain acyl-CoA transporter ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism General function prediction only]. // Transporter ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis transport and catabolism]. // ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism Translation ribosomal structure and biogenesis]. // Pleiotropic drug resistance proteins (PDR1-15) ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Predicted transporter (ABC superfamily) [General function prediction only]. Code Enzyme  EC:3.6.3.44
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1424  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1581350 81 1421 + 1341 Gaps:6 90.14 1481 78.95 0.0 multidrug resistance-associated protein 1 3 (mrp1 3) abc-transoprter putative (EC:1.3.1.74)
blastp_kegg lcl|tcc:TCM_015324 81 1423 + 1343 Gaps:6 90.29 1483 77.89 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa000197mg 82 1423 + 1342 Gaps:12 90.18 1477 78.60 0.0 hypothetical protein
blastp_kegg lcl|cit:102616643 75 1423 + 1349 Gaps:6 90.69 1483 76.28 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|cic:CICLE_v10004145mg 75 1423 + 1349 Gaps:6 90.69 1483 76.21 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_015319 81 1423 + 1343 Gaps:6 90.29 1483 77.22 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|pmum:103333683 82 1423 + 1342 Gaps:12 90.12 1478 77.85 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|fve:101300583 82 1423 + 1342 Gaps:12 90.71 1475 77.80 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|pop:POPTR_0015s06010g 93 1423 + 1331 Gaps:13 89.43 1476 77.88 0.0 ABC transporter family protein
blastp_kegg lcl|vvi:100245097 81 1423 + 1343 Gaps:7 87.34 1532 76.53 0.0 ABC transporter C family member 10-like
blastp_pdb 2cbz_A 561 1415 + 855 Gaps:20 97.05 237 51.30 8e-63 mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1
blastp_pdb 3g61_B 445 1407 + 963 Gaps:166 69.70 1284 35.42 4e-51 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 445 1407 + 963 Gaps:166 69.70 1284 35.42 4e-51 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 445 1407 + 963 Gaps:166 69.70 1284 35.42 4e-51 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 445 1407 + 963 Gaps:166 69.70 1284 35.42 4e-51 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_B 528 1407 + 880 Gaps:144 69.70 1284 33.85 4e-51 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 528 1407 + 880 Gaps:144 69.70 1284 33.85 4e-51 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3gd7_D 567 1406 + 840 Gaps:19 60.26 390 49.36 1e-50 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_pdb 3gd7_C 567 1406 + 840 Gaps:19 60.26 390 49.36 1e-50 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_pdb 3gd7_B 567 1406 + 840 Gaps:19 60.26 390 49.36 1e-50 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_uniprot_sprot sp|Q9LYS2|AB10C_ARATH 81 1421 + 1341 Gaps:18 91.74 1453 70.14 0.0 ABC transporter C family member 10 OS Arabidopsis thaliana GN ABCC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGU1|AB8C_ARATH 170 1418 + 1249 Gaps:26 85.59 1464 47.09 0.0 ABC transporter C family member 8 OS Arabidopsis thaliana GN ABCC8 PE 2 SV 3
blastp_uniprot_sprot sp|Q7GB25|AB5C_ARATH 146 1417 + 1272 Gaps:62 85.73 1514 45.84 0.0 ABC transporter C family member 5 OS Arabidopsis thaliana GN ABCC5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M1C7|AB9C_ARATH 154 1413 + 1260 Gaps:23 84.40 1506 44.30 0.0 ABC transporter C family member 9 OS Arabidopsis thaliana GN ABCC9 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LK64|AB3C_ARATH 80 1420 + 1341 Gaps:44 90.03 1514 43.73 0.0 ABC transporter C family member 3 OS Arabidopsis thaliana GN ABCC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VZZ4|AB6C_ARATH 80 1419 + 1340 Gaps:38 91.27 1466 43.80 0.0 ABC transporter C family member 6 OS Arabidopsis thaliana GN ABCC6 PE 2 SV 3
blastp_uniprot_sprot sp|Q9LK62|AB7C_ARATH 158 1419 + 1262 Gaps:16 84.66 1493 43.83 0.0 ABC transporter C family member 7 OS Arabidopsis thaliana GN ABCC7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZJ5|AB14C_ARATH 89 1422 + 1334 Gaps:111 88.11 1539 43.66 0.0 ABC transporter C family member 14 OS Arabidopsis thaliana GN ABCC14 PE 1 SV 1
blastp_uniprot_sprot sp|Q7DM58|AB4C_ARATH 81 1413 + 1333 Gaps:47 88.52 1516 41.58 0.0 ABC transporter C family member 4 OS Arabidopsis thaliana GN ABCC4 PE 1 SV 2
blastp_uniprot_sprot sp|Q7FB56|AB15C_ARATH 349 1413 + 1065 Gaps:37 98.58 1053 47.30 0.0 Putative ABC transporter C family member 15 OS Arabidopsis thaliana GN ABCC15 PE 5 SV 2

44 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 590 763 174 SM00382 none ATPases associated with a variety of cellular activities IPR003593
SMART 1203 1395 193 SM00382 none ATPases associated with a variety of cellular activities IPR003593
ProSiteProfiles 855 1140 286 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
SUPERFAMILY 856 1157 302 SSF90123 none none IPR011527
Pfam 1196 1342 147 PF00005 none ABC transporter IPR003439
Pfam 581 715 135 PF00005 none ABC transporter IPR003439
PANTHER 133 1417 1285 PTHR24223:SF192 none none none
PANTHER 42 59 18 PTHR24223:SF192 none none none
Phobius 136 246 111 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 688 702 15 PS00211 none ABC transporters family signature. IPR017871
Gene3D 857 1159 303 G3DSA:1.20.1560.10 none none none
Gene3D 236 544 309 G3DSA:1.20.1560.10 none none none
PANTHER 133 1417 1285 PTHR24223 none none none
PANTHER 42 59 18 PTHR24223 none none none
Phobius 1105 1109 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 285 302 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 473 494 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 563 786 224 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 303 372 70 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 1167 1410 244 SSF52540 none none IPR027417
Phobius 1082 1104 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 274 284 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 83 105 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 247 273 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1110 1129 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 921 1081 161 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 248 528 281 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Gene3D 1177 1413 237 G3DSA:3.40.50.300 none none IPR027417
Gene3D 566 794 229 G3DSA:3.40.50.300 none none IPR027417
Phobius 1 82 82 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

7 Localization

Analysis Start End Length
TMHMM 988 1010 22
TMHMM 109 131 22
TMHMM 888 910 22
TMHMM 473 495 22
TMHMM 854 873 19
TMHMM 378 400 22
TMHMM 83 105 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting