Protein : Qrob_P0322130.2 Q. robur
Protein Identifier  ? Qrob_P0322130.2 Organism . Name  Quercus robur
Score  9.0 Score Type  egn
Protein Description  (M=15) PTHR24223:SF192 - ABC TRANSPORTER C FAMILY MEMBER 10 (PTHR24223:SF192) Code Enzyme  EC:3.6.3.44
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1018  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1581350 16 1017 + 1002 Gaps:89 80.82 1481 63.99 0.0 multidrug resistance-associated protein 1 3 (mrp1 3) abc-transoprter putative (EC:1.3.1.74)
blastp_kegg lcl|pop:POPTR_0015s06010g 21 1017 + 997 Gaps:92 80.56 1476 63.50 0.0 ABC transporter family protein
blastp_kegg lcl|tcc:TCM_015324 21 1017 + 997 Gaps:89 80.38 1483 62.84 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa000197mg 16 1017 + 1002 Gaps:88 80.84 1477 62.56 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_015319 16 1017 + 1002 Gaps:89 80.71 1483 62.32 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|cic:CICLE_v10004145mg 21 1017 + 997 Gaps:89 80.38 1483 61.58 0.0 hypothetical protein
blastp_kegg lcl|cit:102616643 21 1017 + 997 Gaps:89 80.38 1483 61.58 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|fve:101300583 16 1017 + 1002 Gaps:106 82.98 1475 61.11 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|pmum:103333683 16 1017 + 1002 Gaps:95 82.61 1478 60.93 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|vvi:100245097 21 1017 + 997 Gaps:88 77.74 1532 61.21 0.0 ABC transporter C family member 10-like
blastp_pdb 2cbz_A 384 570 + 187 Gaps:5 80.17 237 47.89 1e-51 mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1
blastp_pdb 2pze_B 392 577 + 186 Gaps:1 80.79 229 44.32 1e-40 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pze_A 392 577 + 186 Gaps:1 80.79 229 44.32 1e-40 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_B 392 577 + 186 Gaps:1 76.76 241 44.32 1e-40 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_A 392 577 + 186 Gaps:1 76.76 241 44.32 1e-40 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r10_B 392 573 + 182 none 63.64 286 44.51 4e-40 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r10_A 392 573 + 182 none 63.64 286 44.51 4e-40 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_D 392 573 + 182 none 63.64 286 44.51 4e-40 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_C 392 573 + 182 none 63.64 286 44.51 4e-40 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_B 392 573 + 182 none 63.64 286 44.51 4e-40 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_uniprot_sprot sp|Q9LYS2|AB10C_ARATH 16 1017 + 1002 Gaps:87 82.24 1453 56.32 0.0 ABC transporter C family member 10 OS Arabidopsis thaliana GN ABCC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGU1|AB8C_ARATH 23 1015 + 993 Gaps:101 83.67 1464 38.53 0.0 ABC transporter C family member 8 OS Arabidopsis thaliana GN ABCC8 PE 2 SV 3
blastp_uniprot_sprot sp|Q7GB25|AB5C_ARATH 23 1017 + 995 Gaps:143 82.17 1514 38.18 0.0 ABC transporter C family member 5 OS Arabidopsis thaliana GN ABCC5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LK64|AB3C_ARATH 23 1015 + 993 Gaps:120 81.18 1514 37.67 0.0 ABC transporter C family member 3 OS Arabidopsis thaliana GN ABCC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LK62|AB7C_ARATH 23 1017 + 995 Gaps:98 79.30 1493 37.58 0.0 ABC transporter C family member 7 OS Arabidopsis thaliana GN ABCC7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZZ4|AB6C_ARATH 23 1017 + 995 Gaps:99 80.83 1466 37.30 0.0 ABC transporter C family member 6 OS Arabidopsis thaliana GN ABCC6 PE 2 SV 3
blastp_uniprot_sprot sp|Q9M1C7|AB9C_ARATH 23 1017 + 995 Gaps:115 79.22 1506 36.97 0.0 ABC transporter C family member 9 OS Arabidopsis thaliana GN ABCC9 PE 2 SV 2
blastp_uniprot_sprot sp|Q7FB56|AB15C_ARATH 181 1017 + 837 Gaps:77 94.68 1053 38.72 0.0 Putative ABC transporter C family member 15 OS Arabidopsis thaliana GN ABCC15 PE 5 SV 2
blastp_uniprot_sprot sp|Q7DM58|AB4C_ARATH 11 1017 + 1007 Gaps:123 81.40 1516 34.36 0.0 ABC transporter C family member 4 OS Arabidopsis thaliana GN ABCC4 PE 1 SV 2
blastp_uniprot_sprot sp|Q6UR05|MRP1_CANFA 24 1015 + 992 Gaps:163 80.99 1531 30.16 9e-140 Multidrug resistance-associated protein 1 OS Canis familiaris GN ABCC1 PE 2 SV 1

44 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 618 637 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 880 1011 132 SSF52540 none none IPR027417
Phobius 688 705 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 391 583 193 G3DSA:3.40.50.300 none none IPR027417
Phobius 142 159 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 391 516 126 PF00005 none ABC transporter IPR003439
Pfam 960 1015 56 PF00005 none ABC transporter IPR003439
Phobius 682 687 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 72 358 287 SSF90123 none none IPR011527
Phobius 863 867 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 108 112 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 610 913 304 G3DSA:1.20.1560.10 none none none
Gene3D 74 375 302 G3DSA:1.20.1560.10 none none none
ProSiteProfiles 363 587 225 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 113 130 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 21 1016 996 PTHR24223:SF192 none none none
Phobius 131 141 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 390 571 182 SSF52540 none none IPR027417
SMART 391 564 174 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Phobius 706 742 37 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 236 304 69 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 657 681 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 610 915 306 SSF90123 none none IPR011527
Phobius 328 346 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 347 369 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 160 201 42 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 370 617 248 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 21 1016 996 PTHR24223 none none none
Phobius 638 656 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 767 839 73 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

9 Localization

Analysis Start End Length
TMHMM 215 237 22
TMHMM 617 636 19
TMHMM 651 673 22
TMHMM 678 700 22
TMHMM 744 766 22
TMHMM 305 327 22
TMHMM 865 887 22
TMHMM 839 861 22
TMHMM 347 369 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting