Protein : Qrob_P0322110.2 Q. robur
Protein Identifier  ? Qrob_P0322110.2 Organism . Name  Quercus robur
Score  79.1 Score Type  egn
Protein Description  (M=8) KOG0054//KOG0055//KOG0056//KOG0057//KOG0058//KOG0060//KOG0061//KOG0062//KOG0065//KOG0927 - Multidrug resistance-associated protein/mitoxantrone resistance protein ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Multidrug/pheromone exporter ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Heavy metal exporter HMT1 ABC superfamily [Inorganic ion transport and metabolism]. // Mitochondrial Fe/S cluster exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Peptide exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Long-chain acyl-CoA transporter ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism General function prediction only]. // Transporter ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis transport and catabolism]. // ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism Translation ribosomal structure and biogenesis]. // Pleiotropic drug resistance proteins (PDR1-15) ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Predicted transporter (ABC superfamily) [General function prediction only]. Code Enzyme  EC:3.6.3.44
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1287  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1581350 1 1286 + 1286 Gaps:12 87.64 1481 75.27 0.0 multidrug resistance-associated protein 1 3 (mrp1 3) abc-transoprter putative (EC:1.3.1.74)
blastp_kegg lcl|cic:CICLE_v10004145mg 31 1286 + 1256 none 84.69 1483 76.11 0.0 hypothetical protein
blastp_kegg lcl|cit:102616643 31 1286 + 1256 none 84.69 1483 76.11 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|pop:POPTR_0015s06010g 33 1286 + 1254 Gaps:3 84.76 1476 76.98 0.0 ABC transporter family protein
blastp_kegg lcl|tcc:TCM_015324 38 1286 + 1249 none 84.22 1483 76.70 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa000197mg 38 1286 + 1249 Gaps:3 84.36 1477 76.81 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_015319 38 1286 + 1249 none 84.22 1483 76.38 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|vvi:100245097 31 1286 + 1256 Gaps:1 81.92 1532 75.06 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|pmum:103333683 38 1286 + 1249 Gaps:3 84.30 1478 75.84 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|pop:POPTR_0012s01200g 30 1286 + 1257 Gaps:1 84.86 1480 75.16 0.0 POPTRDRAFT_421844 hypothetical protein
blastp_pdb 2cbz_A 433 1281 + 849 Gaps:20 96.62 237 52.40 2e-61 mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1
blastp_pdb 3g5u_B 399 1282 + 884 Gaps:111 71.18 1284 32.06 4e-53 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 399 1282 + 884 Gaps:111 71.18 1284 32.06 4e-53 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_B 357 1282 + 926 Gaps:119 71.18 1284 32.93 4e-53 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 357 1282 + 926 Gaps:119 71.18 1284 32.93 4e-53 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 357 1282 + 926 Gaps:119 71.18 1284 32.93 4e-53 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 357 1282 + 926 Gaps:119 71.18 1284 32.93 4e-53 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3gd7_D 416 1272 + 857 Gaps:30 63.08 390 48.78 5e-48 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_pdb 3gd7_C 416 1272 + 857 Gaps:30 63.08 390 48.78 5e-48 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_pdb 3gd7_B 416 1272 + 857 Gaps:30 63.08 390 48.78 5e-48 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_uniprot_sprot sp|Q9LYS2|AB10C_ARATH 31 1286 + 1256 Gaps:6 86.30 1453 69.86 0.0 ABC transporter C family member 10 OS Arabidopsis thaliana GN ABCC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q7GB25|AB5C_ARATH 38 1282 + 1245 Gaps:75 85.01 1514 46.54 0.0 ABC transporter C family member 5 OS Arabidopsis thaliana GN ABCC5 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGU1|AB8C_ARATH 42 1284 + 1243 Gaps:21 85.52 1464 45.77 0.0 ABC transporter C family member 8 OS Arabidopsis thaliana GN ABCC8 PE 2 SV 3
blastp_uniprot_sprot sp|Q9LK64|AB3C_ARATH 31 1281 + 1251 Gaps:33 84.02 1514 44.73 0.0 ABC transporter C family member 3 OS Arabidopsis thaliana GN ABCC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M1C7|AB9C_ARATH 20 1279 + 1260 Gaps:25 84.40 1506 43.27 0.0 ABC transporter C family member 9 OS Arabidopsis thaliana GN ABCC9 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VZZ4|AB6C_ARATH 32 1279 + 1248 Gaps:12 85.68 1466 43.71 0.0 ABC transporter C family member 6 OS Arabidopsis thaliana GN ABCC6 PE 2 SV 3
blastp_uniprot_sprot sp|Q9LK62|AB7C_ARATH 29 1279 + 1251 Gaps:13 84.13 1493 42.91 0.0 ABC transporter C family member 7 OS Arabidopsis thaliana GN ABCC7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZJ5|AB14C_ARATH 38 1284 + 1247 Gaps:103 83.56 1539 43.39 0.0 ABC transporter C family member 14 OS Arabidopsis thaliana GN ABCC14 PE 1 SV 1
blastp_uniprot_sprot sp|Q7DM58|AB4C_ARATH 31 1279 + 1249 Gaps:34 83.44 1516 41.74 0.0 ABC transporter C family member 4 OS Arabidopsis thaliana GN ABCC4 PE 1 SV 2
blastp_uniprot_sprot sp|Q7FB56|AB15C_ARATH 220 1279 + 1060 Gaps:32 98.58 1053 46.34 0.0 Putative ABC transporter C family member 15 OS Arabidopsis thaliana GN ABCC15 PE 5 SV 2

46 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 35 55 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 1043 1277 235 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
SUPERFAMILY 714 1025 312 SSF90123 none none IPR011527
Phobius 948 970 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 425 657 233 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 386 404 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 56 117 62 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 427 656 230 SSF52540 none none IPR027417
Phobius 199 240 42 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 344 366 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 559 573 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 971 976 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 13 1283 1271 PTHR24223:SF192 none none none
Phobius 765 791 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 152 169 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 1069 1261 193 SM00382 none ATPases associated with a variety of cellular activities IPR003593
SMART 461 634 174 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Phobius 792 849 58 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 118 146 29 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 996 1286 291 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 275 343 69 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 877 947 71 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 746 764 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 1033 1269 237 SSF52540 none none IPR027417
Gene3D 107 415 309 G3DSA:1.20.1560.10 none none none
Gene3D 729 1023 295 G3DSA:1.20.1560.10 none none none
PANTHER 13 1283 1271 PTHR24223 none none none
Pfam 1062 1208 147 PF00005 none ABC transporter IPR003439
Pfam 452 586 135 PF00005 none ABC transporter IPR003439
Phobius 367 385 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

7 Localization

Analysis Start End Length
TMHMM 344 366 22
TMHMM 853 875 22
TMHMM 759 781 22
TMHMM 725 744 19
TMHMM 386 408 22
TMHMM 246 268 22
TMHMM 124 146 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting