Protein : Qrob_P0322060.2 Q. robur
Protein Identifier  ? Qrob_P0322060.2 Organism . Name  Quercus robur
Score  96.2 Score Type  egn
Protein Description  (M=1) KOG0054//KOG0055//KOG0056//KOG0057//KOG0058//KOG0061//KOG0062//KOG0065//KOG0927 - Multidrug resistance-associated protein/mitoxantrone resistance protein ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Multidrug/pheromone exporter ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Heavy metal exporter HMT1 ABC superfamily [Inorganic ion transport and metabolism]. // Mitochondrial Fe/S cluster exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Peptide exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Transporter ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis transport and catabolism]. // ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism Translation ribosomal structure and biogenesis]. // Pleiotropic drug resistance proteins (PDR1-15) ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Predicted transporter (ABC superfamily) [General function prediction only]. Code Enzyme  EC:3.6.3.44
Gene Prediction Quality  validated Protein length 

Sequence

Length: 777  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

49 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1581350 3 761 + 759 Gaps:64 51.38 1481 72.93 0.0 multidrug resistance-associated protein 1 3 (mrp1 3) abc-transoprter putative (EC:1.3.1.74)
blastp_kegg lcl|tcc:TCM_015324 3 761 + 759 Gaps:64 51.31 1483 71.09 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|vvi:100245097 3 761 + 759 Gaps:65 49.61 1532 71.45 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|cit:102616643 3 761 + 759 Gaps:64 51.31 1483 70.30 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|pper:PRUPE_ppa000197mg 3 761 + 759 Gaps:64 51.39 1477 71.67 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_015319 3 761 + 759 Gaps:64 51.31 1483 70.83 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|cic:CICLE_v10004145mg 3 761 + 759 Gaps:64 51.31 1483 70.17 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0015s06010g 5 761 + 757 Gaps:64 51.42 1476 70.49 0.0 ABC transporter family protein
blastp_kegg lcl|fve:101299532 3 761 + 759 Gaps:64 51.59 1475 70.04 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|pmum:103333683 3 761 + 759 Gaps:64 51.35 1478 70.88 0.0 ABC transporter C family member 10-like
blastp_pdb 2cbz_A 3 168 + 166 Gaps:2 70.89 237 44.05 1e-44 mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1
blastp_pdb 2pze_B 3 143 + 141 none 61.57 229 43.97 4e-33 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pze_A 3 143 + 141 none 61.57 229 43.97 4e-33 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_B 3 143 + 141 none 58.51 241 43.97 6e-33 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_A 3 143 + 141 none 58.51 241 43.97 6e-33 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r10_B 2 143 + 142 none 49.65 286 42.25 9e-32 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r10_A 2 143 + 142 none 49.65 286 42.25 9e-32 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_D 2 143 + 142 none 49.65 286 42.25 9e-32 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_C 2 143 + 142 none 49.65 286 42.25 9e-32 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_B 2 143 + 142 none 49.65 286 42.25 9e-32 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_uniprot_sprot sp|Q9LYS2|AB10C_ARATH 3 761 + 759 Gaps:68 52.10 1453 64.73 0.0 ABC transporter C family member 10 OS Arabidopsis thaliana GN ABCC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGU1|AB8C_ARATH 3 761 + 759 Gaps:75 54.03 1464 47.03 0.0 ABC transporter C family member 8 OS Arabidopsis thaliana GN ABCC8 PE 2 SV 3
blastp_uniprot_sprot sp|Q7GB25|AB5C_ARATH 3 761 + 759 Gaps:119 52.71 1514 43.98 0.0 ABC transporter C family member 5 OS Arabidopsis thaliana GN ABCC5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M1C7|AB9C_ARATH 3 761 + 759 Gaps:110 54.05 1506 45.21 0.0 ABC transporter C family member 9 OS Arabidopsis thaliana GN ABCC9 PE 2 SV 2
blastp_uniprot_sprot sp|Q7FB56|AB15C_ARATH 3 761 + 759 Gaps:125 73.79 1053 46.85 0.0 Putative ABC transporter C family member 15 OS Arabidopsis thaliana GN ABCC15 PE 5 SV 2
blastp_uniprot_sprot sp|Q9LK64|AB3C_ARATH 3 762 + 760 Gaps:98 53.70 1514 45.14 0.0 ABC transporter C family member 3 OS Arabidopsis thaliana GN ABCC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VZZ4|AB6C_ARATH 3 762 + 760 Gaps:77 52.59 1466 43.84 0.0 ABC transporter C family member 6 OS Arabidopsis thaliana GN ABCC6 PE 2 SV 3
blastp_uniprot_sprot sp|Q9LK62|AB7C_ARATH 3 762 + 760 Gaps:84 53.72 1493 44.76 0.0 ABC transporter C family member 7 OS Arabidopsis thaliana GN ABCC7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZJ5|AB14C_ARATH 3 761 + 759 Gaps:116 54.13 1539 43.34 0.0 ABC transporter C family member 14 OS Arabidopsis thaliana GN ABCC14 PE 1 SV 1
blastp_uniprot_sprot sp|Q7DM58|AB4C_ARATH 3 761 + 759 Gaps:89 53.30 1516 43.56 5e-178 ABC transporter C family member 4 OS Arabidopsis thaliana GN ABCC4 PE 1 SV 2

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 594 683 90 PF00005 none ABC transporter IPR003439
Pfam 5 96 92 PF00005 none ABC transporter IPR003439
Phobius 423 497 75 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 236 335 100 SSF90123 none none IPR011527
ProSitePatterns 69 83 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 275 295 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 256 274 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 601 769 169 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Phobius 396 400 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 364 553 190 SSF90123 none none IPR011527
Gene3D 581 678 98 G3DSA:3.40.50.300 none none IPR027417
Phobius 375 395 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 2 334 333 PTHR24223:SF192 none none none
PANTHER 364 761 398 PTHR24223:SF192 none none none
Pfam 247 336 90 PF00664 none ABC transporter transmembrane region IPR011527
Gene3D 3 175 173 G3DSA:3.40.50.300 none none IPR027417
Gene3D 701 761 61 G3DSA:3.40.50.300 none none IPR027417
Phobius 1 235 235 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 3 167 165 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
ProSiteProfiles 240 473 234 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Phobius 498 518 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 6 167 162 SSF52540 none none IPR027417
Phobius 401 422 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 296 374 79 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 574 762 189 SSF52540 none none IPR027417
Phobius 236 255 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 238 551 314 G3DSA:1.20.1560.10 none none none
Phobius 519 776 258 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 2 334 333 PTHR24223 none none none
PANTHER 364 761 398 PTHR24223 none none none

3 Localization

Analysis Start End Length
TMHMM 235 254 19
TMHMM 269 291 22
TMHMM 393 415 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting