Protein : Qrob_P0322050.2 Q. robur
Protein Identifier  ? Qrob_P0322050.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) KOG0054//KOG0055 - Multidrug resistance-associated protein/mitoxantrone resistance protein ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Multidrug/pheromone exporter ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. Code Enzyme  EC:3.6.3.44
Gene Prediction Quality  validated Protein length 

Sequence

Length: 423  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1581350 4 414 + 411 Gaps:53 31.33 1481 66.38 0.0 multidrug resistance-associated protein 1 3 (mrp1 3) abc-transoprter putative (EC:1.3.1.74)
blastp_kegg lcl|sot:102594457 4 421 + 418 Gaps:53 32.13 1466 65.61 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|pop:POPTR_0015s06010g 4 413 + 410 Gaps:52 31.30 1476 66.67 0.0 ABC transporter family protein
blastp_kegg lcl|pper:PRUPE_ppa000197mg 11 421 + 411 Gaps:52 31.35 1477 65.44 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333683 11 421 + 411 Gaps:52 31.33 1478 65.44 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|gmx:100817665 3 421 + 419 Gaps:53 31.91 1479 65.89 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|cic:CICLE_v10004145mg 4 421 + 418 Gaps:53 31.76 1483 65.18 0.0 hypothetical protein
blastp_kegg lcl|cit:102616643 4 421 + 418 Gaps:53 31.76 1483 65.18 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|vvi:100245097 4 421 + 418 Gaps:53 30.74 1532 65.18 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|fve:101300583 11 421 + 411 Gaps:52 31.39 1475 65.01 0.0 ABC transporter C family member 10-like
blastp_pdb 3si7_D 370 421 + 52 none 18.25 285 40.38 4e-06 mol:protein length:285 Cystic fibrosis transmembrane conductance reg
blastp_pdb 3si7_C 370 421 + 52 none 18.25 285 40.38 4e-06 mol:protein length:285 Cystic fibrosis transmembrane conductance reg
blastp_pdb 3si7_B 370 421 + 52 none 18.25 285 40.38 4e-06 mol:protein length:285 Cystic fibrosis transmembrane conductance reg
blastp_pdb 3si7_A 370 421 + 52 none 18.25 285 40.38 4e-06 mol:protein length:285 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1xf9_D 370 421 + 52 none 18.37 283 40.38 4e-06 mol:protein length:283 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1xf9_C 370 421 + 52 none 18.37 283 40.38 4e-06 mol:protein length:283 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1xf9_B 370 421 + 52 none 18.37 283 40.38 4e-06 mol:protein length:283 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1xf9_A 370 421 + 52 none 18.37 283 40.38 4e-06 mol:protein length:283 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r10_B 370 421 + 52 none 18.18 286 40.38 4e-06 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r10_A 370 421 + 52 none 18.18 286 40.38 4e-06 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_uniprot_sprot sp|Q9LYS2|AB10C_ARATH 3 421 + 419 Gaps:55 32.62 1453 56.96 2e-175 ABC transporter C family member 10 OS Arabidopsis thaliana GN ABCC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q7GB25|AB5C_ARATH 11 414 + 404 Gaps:52 30.12 1514 37.28 2e-97 ABC transporter C family member 5 OS Arabidopsis thaliana GN ABCC5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LK64|AB3C_ARATH 3 414 + 412 Gaps:54 30.78 1514 36.70 3e-93 ABC transporter C family member 3 OS Arabidopsis thaliana GN ABCC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LGU1|AB8C_ARATH 14 421 + 408 Gaps:55 31.63 1464 36.50 1e-87 ABC transporter C family member 8 OS Arabidopsis thaliana GN ABCC8 PE 2 SV 3
blastp_uniprot_sprot sp|Q8VZZ4|AB6C_ARATH 3 414 + 412 Gaps:52 31.65 1466 35.78 2e-85 ABC transporter C family member 6 OS Arabidopsis thaliana GN ABCC6 PE 2 SV 3
blastp_uniprot_sprot sp|Q9LK62|AB7C_ARATH 3 414 + 412 Gaps:52 31.08 1493 34.70 5e-85 ABC transporter C family member 7 OS Arabidopsis thaliana GN ABCC7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M1C7|AB9C_ARATH 2 414 + 413 Gaps:53 30.94 1506 34.33 2e-77 ABC transporter C family member 9 OS Arabidopsis thaliana GN ABCC9 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LZJ5|AB14C_ARATH 3 414 + 412 Gaps:54 29.76 1539 30.57 6e-65 ABC transporter C family member 14 OS Arabidopsis thaliana GN ABCC14 PE 1 SV 1
blastp_uniprot_sprot sp|Q7DM58|AB4C_ARATH 3 418 + 416 Gaps:54 30.47 1516 30.09 1e-61 ABC transporter C family member 4 OS Arabidopsis thaliana GN ABCC4 PE 1 SV 2
blastp_uniprot_sprot sp|Q54P13|ABCC8_DICDI 17 413 + 397 Gaps:52 27.81 1593 30.25 2e-57 ABC transporter C family member 8 OS Dictyostelium discoideum GN abcC8 PE 3 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 11 416 406 PTHR24223 none none none
Phobius 303 324 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 140 157 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 325 422 98 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 84 105 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 11 416 406 PTHR24223:SF192 none none none
Phobius 158 199 42 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 372 415 44 PF00005 none ABC transporter IPR003439
Gene3D 366 415 50 G3DSA:3.40.50.300 none none IPR027417
Phobius 129 139 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 70 361 292 G3DSA:1.20.1560.10 none none none
ProSiteProfiles 78 323 246 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
SUPERFAMILY 69 362 294 SSF90123 none none IPR011527
Phobius 1 83 83 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 234 302 69 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 200 233 34 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 106 110 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 77 319 243 PF00664 none ABC transporter transmembrane region IPR011527
Phobius 111 128 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 333 415 83 SSF52540 none none IPR027417

4 Localization

Analysis Start End Length
TMHMM 7 26 19
TMHMM 303 325 22
TMHMM 83 105 22
TMHMM 208 230 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting