Protein : Qrob_P0322030.2 Q. robur
Protein Identifier  ? Qrob_P0322030.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0054//KOG0055//KOG0056//KOG0057//KOG0058//KOG0060//KOG0061//KOG0062//KOG0927 - Multidrug resistance-associated protein/mitoxantrone resistance protein ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Multidrug/pheromone exporter ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Heavy metal exporter HMT1 ABC superfamily [Inorganic ion transport and metabolism]. // Mitochondrial Fe/S cluster exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Peptide exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Long-chain acyl-CoA transporter ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism General function prediction only]. // Transporter ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis transport and catabolism]. // ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism Translation ribosomal structure and biogenesis]. // Predicted transporter (ABC superfamily) [General function prediction only]. Code Enzyme  EC:3.6.3.44
Gene Prediction Quality  validated Protein length 

Sequence

Length: 821  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

49 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1581350 5 812 + 808 Gaps:40 57.26 1481 71.34 0.0 multidrug resistance-associated protein 1 3 (mrp1 3) abc-transoprter putative (EC:1.3.1.74)
blastp_kegg lcl|pop:POPTR_0015s06010g 6 812 + 807 Gaps:43 57.18 1476 70.73 0.0 ABC transporter family protein
blastp_kegg lcl|pper:PRUPE_ppa000197mg 1 812 + 812 Gaps:45 57.75 1477 70.22 0.0 hypothetical protein
blastp_kegg lcl|cit:102616643 3 812 + 810 Gaps:40 57.32 1483 69.41 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|cic:CICLE_v10004145mg 3 812 + 810 Gaps:40 57.32 1483 69.29 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333683 1 812 + 812 Gaps:45 57.71 1478 70.11 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|tcc:TCM_015324 11 812 + 802 Gaps:40 56.78 1483 70.67 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|vvi:100245097 5 812 + 808 Gaps:41 55.29 1532 70.13 0.0 ABC transporter C family member 10-like
blastp_kegg lcl|tcc:TCM_015319 11 812 + 802 Gaps:40 56.78 1483 69.95 0.0 Multidrug resistance-associated protein 14 isoform 1
blastp_kegg lcl|fve:101300583 11 812 + 802 Gaps:42 57.08 1475 70.31 0.0 ABC transporter C family member 10-like
blastp_pdb 2cbz_A 405 610 + 206 Gaps:24 96.20 237 40.35 7e-53 mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1
blastp_pdb 1r10_B 405 603 + 199 Gaps:21 76.92 286 35.91 6e-36 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r10_A 405 603 + 199 Gaps:21 76.92 286 35.91 6e-36 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_D 405 603 + 199 Gaps:21 76.92 286 35.91 6e-36 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_C 405 603 + 199 Gaps:21 76.92 286 35.91 6e-36 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_B 405 603 + 199 Gaps:21 76.92 286 35.91 6e-36 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_A 405 603 + 199 Gaps:21 76.92 286 35.91 6e-36 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0y_D 405 603 + 199 Gaps:21 76.92 286 35.91 6e-36 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0y_C 405 603 + 199 Gaps:21 76.92 286 35.91 6e-36 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0y_B 405 603 + 199 Gaps:21 76.92 286 35.91 6e-36 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_uniprot_sprot sp|Q9LYS2|AB10C_ARATH 2 812 + 811 Gaps:40 58.29 1453 63.64 0.0 ABC transporter C family member 10 OS Arabidopsis thaliana GN ABCC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGU1|AB8C_ARATH 14 796 + 783 Gaps:88 75.14 1464 36.09 0.0 ABC transporter C family member 8 OS Arabidopsis thaliana GN ABCC8 PE 2 SV 3
blastp_uniprot_sprot sp|Q7GB25|AB5C_ARATH 11 804 + 794 Gaps:80 57.46 1514 38.97 0.0 ABC transporter C family member 5 OS Arabidopsis thaliana GN ABCC5 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VZZ4|AB6C_ARATH 5 805 + 801 Gaps:52 57.91 1466 38.75 0.0 ABC transporter C family member 6 OS Arabidopsis thaliana GN ABCC6 PE 2 SV 3
blastp_uniprot_sprot sp|Q9LK62|AB7C_ARATH 2 805 + 804 Gaps:87 72.00 1493 35.53 0.0 ABC transporter C family member 7 OS Arabidopsis thaliana GN ABCC7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK64|AB3C_ARATH 3 812 + 810 Gaps:75 58.06 1514 39.48 0.0 ABC transporter C family member 3 OS Arabidopsis thaliana GN ABCC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M1C7|AB9C_ARATH 6 804 + 799 Gaps:101 70.85 1506 36.27 0.0 ABC transporter C family member 9 OS Arabidopsis thaliana GN ABCC9 PE 2 SV 2
blastp_uniprot_sprot sp|Q7DM58|AB4C_ARATH 5 809 + 805 Gaps:79 56.86 1516 35.38 2e-162 ABC transporter C family member 4 OS Arabidopsis thaliana GN ABCC4 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LZJ5|AB14C_ARATH 11 809 + 799 Gaps:140 71.67 1539 32.09 6e-160 ABC transporter C family member 14 OS Arabidopsis thaliana GN ABCC14 PE 1 SV 1
blastp_uniprot_sprot sp|Q7FB56|AB15C_ARATH 193 804 + 612 Gaps:79 79.96 1053 37.41 4e-151 Putative ABC transporter C family member 15 OS Arabidopsis thaliana GN ABCC15 PE 5 SV 2

36 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 798 815 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 92 372 281 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Phobius 29 90 62 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 771 792 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 679 697 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 217 244 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 80 388 309 G3DSA:1.20.1560.10 none none none
Gene3D 661 815 155 G3DSA:1.20.1560.10 none none none
PANTHER 11 812 802 PTHR24223:SF192 none none none
Phobius 816 820 5 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 662 815 154 PF00664 none ABC transporter transmembrane region IPR011527
Pfam 92 356 265 PF00664 none ABC transporter transmembrane region IPR011527
Pfam 425 551 127 PF00005 none ABC transporter IPR003439
Phobius 698 724 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 434 602 169 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Phobius 725 770 46 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 120 124 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 91 119 29 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 659 678 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 11 812 802 PTHR24223 none none none
Phobius 245 316 72 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 80 385 306 SSF90123 none none IPR011527
SUPERFAMILY 647 814 168 SSF90123 none none IPR011527
Phobius 143 216 74 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 338 658 321 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 6 28 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 532 546 15 PS00211 none ABC transporters family signature. IPR017871
ProSiteProfiles 659 820 162 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Gene3D 559 615 57 G3DSA:3.40.50.300 none none IPR027417
Gene3D 411 554 144 G3DSA:3.40.50.300 none none IPR027417

8 Localization

Analysis Start End Length
TMHMM 10 29 19
TMHMM 97 119 22
TMHMM 219 241 22
TMHMM 771 793 22
TMHMM 317 339 22
TMHMM 798 815 17
TMHMM 658 680 22
TMHMM 700 722 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting