Protein : Qrob_P0319300.2 Q. robur
Protein Identifier  ? Qrob_P0319300.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03020 - DNA-directed RNA polymerases I and III subunit RPAC2 Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 108  
Kegg Orthology  K03020
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100500695 1 107 + 107 none 100.00 107 77.57 2e-56 uncharacterized LOC100500695
blastp_kegg lcl|vvi:100245061 1 99 + 99 none 94.29 105 76.77 2e-52 DNA-directed RNA polymerases I and III subunit RPAC2-like
blastp_kegg lcl|tcc:TCM_041707 1 99 + 99 none 86.84 114 79.80 3e-52 DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
blastp_kegg lcl|gmx:100807892 1 107 + 107 Gaps:1 100.00 106 73.58 6e-51 DNA-directed RNA polymerases I and III subunit RPAC2-like
blastp_kegg lcl|cic:CICLE_v10029631mg 1 93 + 93 none 86.92 107 79.57 4e-50 hypothetical protein
blastp_kegg lcl|cit:102623776 1 93 + 93 none 86.92 107 79.57 4e-50 DNA-directed RNA polymerases I and III subunit RPAC2-like
blastp_kegg lcl|csv:101216823 1 97 + 97 none 93.27 104 75.26 7e-50 DNA-directed RNA polymerases I and III subunit RPAC2-like
blastp_kegg lcl|csv:101212403 1 100 + 100 none 92.59 108 74.00 1e-49 DNA-directed RNA polymerases I and III subunit RPAC2-like
blastp_kegg lcl|cam:101508940 1 93 + 93 none 89.42 104 78.49 2e-49 DNA-directed RNA polymerases I and III subunit RPAC2-like
blastp_kegg lcl|cmo:103497108 1 102 + 102 none 94.44 108 71.57 3e-49 DNA-directed RNA polymerases I and III subunit RPAC2
blastp_pdb 3h0g_W 12 82 + 71 Gaps:1 58.54 123 37.50 5e-10 mol:protein length:123 DNA-directed RNA polymerase II subunit RPB11
blastp_pdb 3h0g_K 12 82 + 71 Gaps:1 58.54 123 37.50 5e-10 mol:protein length:123 DNA-directed RNA polymerase II subunit RPB11
blastp_pdb 4a93_K 15 86 + 72 Gaps:1 60.83 120 32.88 3e-09 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3m_K 15 86 + 72 Gaps:1 60.83 120 32.88 3e-09 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3l_K 15 86 + 72 Gaps:1 60.83 120 32.88 3e-09 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3k_K 15 86 + 72 Gaps:1 60.83 120 32.88 3e-09 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3j_K 15 86 + 72 Gaps:1 60.83 120 32.88 3e-09 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3i_K 15 86 + 72 Gaps:1 60.83 120 32.88 3e-09 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3g_K 15 86 + 72 Gaps:1 60.83 120 32.88 3e-09 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3f_K 15 86 + 72 Gaps:1 60.83 120 32.88 3e-09 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_uniprot_sprot sp|P97304|RPAC2_MOUSE 1 101 + 101 Gaps:1 76.69 133 37.25 5e-22 DNA-directed RNA polymerases I and III subunit RPAC2 OS Mus musculus GN Polr1d PE 2 SV 1
blastp_uniprot_sprot sp|Q5XK67|RPAC2_XENLA 8 93 + 86 Gaps:1 76.32 114 41.38 6e-21 DNA-directed RNA polymerases I and III subunit RPAC2 OS Xenopus laevis GN polr1d PE 3 SV 1
blastp_uniprot_sprot sp|Q1RMG8|RPAC2_BOVIN 1 93 + 93 Gaps:1 70.68 133 39.36 1e-20 DNA-directed RNA polymerases I and III subunit RPAC2 OS Bos taurus GN POLR1D PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y2S0|RPAC2_HUMAN 1 93 + 93 Gaps:1 70.68 133 38.30 5e-20 DNA-directed RNA polymerases I and III subunit RPAC2 OS Homo sapiens GN POLR1D PE 1 SV 1
blastp_uniprot_sprot sp|P28000|RPAC2_YEAST 1 83 + 83 Gaps:1 59.15 142 44.05 7e-20 DNA-directed RNA polymerases I and III subunit RPAC2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPC19 PE 1 SV 1
blastp_uniprot_sprot sp|Q6DRI4|RPAC2_DANRE 7 93 + 87 Gaps:1 78.57 112 42.05 1e-19 DNA-directed RNA polymerases I and III subunit RPAC2 OS Danio rerio GN polr1d PE 3 SV 1
blastp_uniprot_sprot sp|Q54ES6|RPC19_DICDI 12 89 + 78 Gaps:1 68.10 116 49.37 1e-19 DNA-directed RNA polymerases I and III subunit rpc19 OS Dictyostelium discoideum GN rpc19 PE 3 SV 1
blastp_uniprot_sprot sp|Q09177|RPAC2_SCHPO 4 81 + 78 Gaps:1 63.20 125 43.04 9e-17 DNA-directed RNA polymerases I and III subunit RPAC2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpc19 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VIZ0|RPAC2_DROME 13 92 + 80 none 76.19 105 37.50 2e-15 Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS Drosophila melanogaster GN l(2)37Cg PE 3 SV 1
blastp_uniprot_sprot sp|P52435|RPB11_HUMAN 14 91 + 78 Gaps:1 67.52 117 37.97 7e-13 DNA-directed RNA polymerase II subunit RPB11-a OS Homo sapiens GN POLR2J PE 1 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 8 93 86 SSF55257 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" none IPR009025
PANTHER 8 107 100 PTHR13946:SF16 none none none
ProSitePatterns 16 47 32 PS01154 none RNA polymerases L / 13 to 16 Kd subunits signature. IPR008193
PANTHER 8 107 100 PTHR13946 none none none
Gene3D 8 94 87 G3DSA:3.30.1360.10 none none none
Pfam 11 85 75 PF13656 none RNA polymerase Rpb3/Rpb11 dimerisation domain none

0 Localization

0 Qtllist

0 Targeting