Protein : Qrob_P0318540.2 Q. robur
Protein Identifier  ? Qrob_P0318540.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K12121 - phytochrome B Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1017  
Kegg Orthology  K12121
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0004871 signal transducer activity Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
GO:0000155 phosphorelay sensor kinase activity Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
GO:0018298 protein-chromophore linkage The covalent or noncovalent attachment of a chromophore to a protein.
GO:0009584 detection of visible light The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_021372 1 1016 + 1016 Gaps:29 89.19 1138 80.99 0.0 Phytochrome B isoform 1
blastp_kegg lcl|cit:102618185 1 1015 + 1015 Gaps:29 89.18 1137 80.87 0.0 phytochrome B-like
blastp_kegg lcl|vvi:100261882 1 1016 + 1016 Gaps:30 89.99 1129 80.81 0.0 phytochrome B-like
blastp_kegg lcl|pmum:103323170 1 1016 + 1016 Gaps:30 90.62 1119 80.67 0.0 phytochrome B
blastp_kegg lcl|rcu:RCOM_1000590 1 1016 + 1016 Gaps:29 88.96 1141 80.00 0.0 phytochrome B putative
blastp_kegg lcl|pper:PRUPE_ppa000510mg 1 1016 + 1016 Gaps:30 90.62 1119 80.28 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s15600g 1 1010 + 1010 Gaps:29 88.98 1134 80.08 0.0 POPTRDRAFT_1091155 hypothetical protein
blastp_kegg lcl|cmo:103483895 1 1015 + 1015 Gaps:30 89.66 1132 79.31 0.0 phytochrome B
blastp_kegg lcl|mdm:103431933 1 1016 + 1016 Gaps:29 90.62 1120 79.11 0.0 phytochrome B
blastp_kegg lcl|fve:101306611 1 1009 + 1009 Gaps:29 88.73 1136 79.56 0.0 phytochrome B-like
blastp_pdb 2vea_A 36 455 + 420 Gaps:51 81.73 520 32.24 2e-53 mol:protein length:520 PHYTOCHROME-LIKE PROTEIN CPH1
blastp_pdb 3zq5_A 36 455 + 420 Gaps:51 81.73 520 32.00 7e-53 mol:protein length:520 PHYTOCHROME-LIKE PROTEIN CPH1
blastp_pdb 3ibr_B 99 458 + 360 Gaps:59 71.88 505 32.23 6e-41 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3ibr_A 99 458 + 360 Gaps:59 71.88 505 32.23 6e-41 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3g6o_B 99 458 + 360 Gaps:59 71.88 505 32.23 6e-41 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3g6o_A 99 458 + 360 Gaps:59 71.88 505 32.23 6e-41 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_H 99 458 + 360 Gaps:77 71.88 505 33.06 4e-40 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_G 99 458 + 360 Gaps:77 71.88 505 33.06 4e-40 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_F 99 458 + 360 Gaps:77 71.88 505 33.06 4e-40 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_E 99 458 + 360 Gaps:77 71.88 505 33.06 4e-40 mol:protein length:505 Bacteriophytochrome
blastp_uniprot_sprot sp|P29130|PHYB_TOBAC 1 1015 + 1015 Gaps:30 89.49 1132 79.57 0.0 Phytochrome B OS Nicotiana tabacum GN PHYB PE 2 SV 2
blastp_uniprot_sprot sp|P34094|PHYB_SOLTU 1 1015 + 1015 Gaps:30 89.82 1130 78.82 0.0 Phytochrome B OS Solanum tuberosum GN PHYB PE 3 SV 2
blastp_uniprot_sprot sp|Q9ZS62|PHYB1_SOLLC 1 1015 + 1015 Gaps:31 89.66 1131 77.22 0.0 Phytochrome B1 OS Solanum lycopersicum GN PHYB1 PE 2 SV 1
blastp_uniprot_sprot sp|P14713|PHYB_ARATH 1 1010 + 1010 Gaps:37 86.60 1172 73.50 0.0 Phytochrome B OS Arabidopsis thaliana GN PHYB PE 1 SV 1
blastp_uniprot_sprot sp|P42499|PHYB_SOYBN 2 1013 + 1012 Gaps:41 87.80 1156 74.09 0.0 Phytochrome B OS Glycine max GN PHYB PE 3 SV 1
blastp_uniprot_sprot sp|A2XFW2|PHYB_ORYSI 1 1011 + 1011 Gaps:42 87.36 1171 72.83 0.0 Phytochrome B OS Oryza sativa subsp. indica GN PHYB PE 3 SV 2
blastp_uniprot_sprot sp|Q10MG9|PHYB_ORYSJ 1 1011 + 1011 Gaps:42 87.36 1171 72.83 0.0 Phytochrome B OS Oryza sativa subsp. japonica GN PHYB PE 2 SV 1
blastp_uniprot_sprot sp|P93527|PHYB_SORBI 1 1009 + 1009 Gaps:40 86.50 1178 72.72 0.0 Phytochrome B OS Sorghum bicolor GN PHYB PE 3 SV 2
blastp_uniprot_sprot sp|P42497|PHYD_ARATH 1 1008 + 1008 Gaps:39 87.20 1164 71.03 0.0 Phytochrome D OS Arabidopsis thaliana GN PHYD PE 1 SV 2
blastp_uniprot_sprot sp|Q41046|PHY_PINSY 1 1010 + 1010 Gaps:32 89.48 1131 66.40 0.0 Phytochrome OS Pinus sylvestris PE 2 SV 1

42 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 782 846 65 SM00388 none His Kinase A (phosphoacceptor) domain IPR003661
Phobius 855 872 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 656 760 105 G3DSA:3.30.450.20 none none none
TIGRFAM 499 566 68 TIGR00229 none sensory_box: PAS domain S-box protein IPR000014
Pfam 786 846 61 PF00512 none His Kinase A (phospho-acceptor) domain IPR003661
SUPERFAMILY 20 81 62 SSF55785 none none IPR000014
PANTHER 578 1010 433 PTHR24423 none none none
ProSiteProfiles 641 719 79 PS50112 none PAS repeat profile. IPR000014
SUPERFAMILY 655 759 105 SSF55785 none none IPR000014
PANTHER 578 1010 433 PTHR24423:SF414 none none none
Phobius 873 1016 144 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 147 562 416 PTHR24423:SF414 none none none
PRINTS 425 443 19 PR01033 none Phytochrome signature IPR001294
PRINTS 603 620 18 PR01033 none Phytochrome signature IPR001294
PRINTS 28 50 23 PR01033 none Phytochrome signature IPR001294
PRINTS 392 411 20 PR01033 none Phytochrome signature IPR001294
PRINTS 623 643 21 PR01033 none Phytochrome signature IPR001294
PRINTS 128 147 20 PR01033 none Phytochrome signature IPR001294
PRINTS 307 327 21 PR01033 none Phytochrome signature IPR001294
Gene3D 113 192 80 G3DSA:3.30.450.40 none none IPR029016
SUPERFAMILY 285 462 178 SSF55781 none none IPR029016
SUPERFAMILY 497 617 121 SSF55785 none none IPR000014
ProSiteProfiles 492 563 72 PS50112 none PAS repeat profile. IPR000014
SMART 113 287 175 SM00065 none Domain present in phytochromes and cGMP-specific phosphodiesterases. IPR003018
ProSiteProfiles 789 1009 221 PS50109 "Reactome:REACT_1046" Histidine kinase domain profile. IPR005467
SMART 494 561 68 SM00091 none PAS domain IPR000014
SMART 640 710 71 SM00091 none PAS domain IPR000014
ProSiteProfiles 113 267 155 PS50046 none Phytochrome chromophore attachment site domain profile. IPR016132
Pfam 114 277 164 PF01590 none GAF domain IPR003018
Gene3D 848 1009 162 G3DSA:3.30.565.10 none none IPR003594

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting