Protein : Qrob_P0316660.2 Q. robur
Protein Identifier  ? Qrob_P0316660.2 Organism . Name  Quercus robur
Score  46.7 Score Type  egn
Protein Description  (M=27) 1.3.3.8 - Tetrahydroberberine oxidase. Code Enzyme  EC:1.3.3.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 537  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100786800 1 535 + 535 Gaps:8 97.79 543 78.53 0.0 cannabidiolic acid synthase-like 1-like
blastp_kegg lcl|gmx:100775353 1 535 + 535 Gaps:8 97.79 543 77.59 0.0 inactive tetrahydrocannabinolic acid synthase-like
blastp_kegg lcl|pvu:PHAVU_006G125800g 31 535 + 505 Gaps:4 93.00 543 78.81 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_027072 19 536 + 518 Gaps:4 94.87 546 77.22 0.0 FAD-binding Berberine family protein
blastp_kegg lcl|gmx:100782093 1 533 + 533 Gaps:6 100.00 531 76.27 0.0 tetrahydrocannabinolic acid synthase-like
blastp_kegg lcl|pper:PRUPE_ppa003798mg 8 536 + 529 Gaps:5 96.72 548 74.34 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_027074 20 529 + 510 Gaps:4 96.23 530 78.43 0.0 FAD-binding Berberine family protein isoform 1
blastp_kegg lcl|mtr:MTR_2g031390 26 535 + 510 Gaps:3 93.76 545 76.52 0.0 Reticuline oxidase-like protein
blastp_kegg lcl|pmum:103325278 12 533 + 522 Gaps:5 95.44 548 74.95 0.0 cannabidiolic acid synthase-like 1
blastp_kegg lcl|cam:101506453 6 535 + 530 Gaps:3 97.43 545 73.45 0.0 cannabidiolic acid synthase-like 1-like
blastp_pdb 3d2j_A 22 529 + 508 Gaps:34 93.31 538 43.43 3e-118 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2h_A 22 529 + 508 Gaps:34 93.31 538 43.43 3e-118 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2d_A 22 529 + 508 Gaps:34 93.31 538 43.43 3e-118 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3fw9_A 32 529 + 498 Gaps:34 99.39 495 43.70 1e-117 mol:protein length:495 Reticuline oxidase
blastp_pdb 3gsy_A 27 529 + 503 Gaps:34 95.76 519 43.46 1e-117 mol:protein length:519 Reticuline oxidase Berberine bridge-forming
blastp_pdb 3fw7_A 32 529 + 498 Gaps:34 98.80 498 43.50 2e-116 mol:protein length:498 Reticuline oxidase
blastp_pdb 3fwa_A 32 529 + 498 Gaps:34 98.99 497 43.50 2e-116 mol:protein length:497 Reticuline oxidase
blastp_pdb 3fw8_A 32 529 + 498 Gaps:34 99.39 495 43.50 3e-116 mol:protein length:495 Reticuline oxidase
blastp_pdb 2y4g_B 68 532 + 465 Gaps:70 90.38 530 28.60 9e-24 mol:protein length:530 TAML
blastp_pdb 2y4g_A 68 532 + 465 Gaps:70 90.38 530 28.60 9e-24 mol:protein length:530 TAML
blastp_uniprot_sprot sp|Q8GTB6|THCAS_CANSA 9 532 + 524 Gaps:17 97.43 545 46.14 1e-163 Tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 1 SV 1
blastp_uniprot_sprot sp|A6P6W1|CASL2_CANSA 5 533 + 529 Gaps:20 99.27 545 45.84 1e-162 Cannabidiolic acid synthase-like 2 OS Cannabis sativa GN CBDAS3 PE 2 SV 1
blastp_uniprot_sprot sp|A6P6W0|CASL1_CANSA 5 533 + 529 Gaps:20 99.27 545 45.84 1e-162 Cannabidiolic acid synthase-like 1 OS Cannabis sativa GN CBDAS2 PE 2 SV 1
blastp_uniprot_sprot sp|A6P6V9|CBDAS_CANSA 27 532 + 506 Gaps:17 94.30 544 46.78 1e-158 Cannabidiolic acid synthase OS Cannabis sativa GN CBDAS PE 1 SV 1
blastp_uniprot_sprot sp|Q33DQ2|THCAI_CANSA 9 532 + 524 Gaps:17 97.43 545 45.95 4e-157 Inactive tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 3 SV 1
blastp_uniprot_sprot sp|Q9SVG4|RETOL_ARATH 26 531 + 506 Gaps:11 88.60 570 48.32 5e-152 Reticuline oxidase-like protein OS Arabidopsis thaliana GN At4g20830 PE 1 SV 2
blastp_uniprot_sprot sp|P30986|RETO_ESCCA 5 529 + 525 Gaps:39 95.54 538 43.00 3e-117 Reticuline oxidase OS Eschscholzia californica GN BBE1 PE 1 SV 1
blastp_uniprot_sprot sp|P93479|RETO_PAPSO 13 529 + 517 Gaps:24 95.51 535 41.29 3e-113 Reticuline oxidase OS Papaver somniferum GN BBE1 PE 3 SV 1
blastp_uniprot_sprot sp|O06997|YVDP_BACSU 92 529 + 438 Gaps:90 89.49 447 32.75 2e-22 Uncharacterized FAD-linked oxidoreductase YvdP OS Bacillus subtilis (strain 168) GN yvdP PE 1 SV 1
blastp_uniprot_sprot sp|Q796Y5|YGAK_BACSU 80 531 + 452 Gaps:75 91.57 451 28.33 1e-21 Uncharacterized FAD-linked oxidoreductase YgaK OS Bacillus subtilis (strain 168) GN ygaK PE 3 SV 4

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 22 26 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 79 140 62 G3DSA:3.30.43.10 none none IPR016167
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 474 529 56 PF08031 none Berberine and berberine like IPR012951
ProSiteProfiles 76 252 177 PS51387 none PCMH-type FAD-binding domain profile. IPR016166
Phobius 10 21 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 65 253 189 SSF56176 none none IPR016166
Gene3D 141 253 113 G3DSA:3.30.465.10 none none IPR016169
PANTHER 1 535 535 PTHR32448 none none none
Pfam 80 219 140 PF01565 "KEGG:00520+1.3.1.98","KEGG:00550+1.3.1.98","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" FAD binding domain IPR006094
Phobius 27 536 510 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

3 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 20 19
SignalP_EUK 1 24 23
SignalP_GRAM_POSITIVE 1 26 25

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting