Protein : Qrob_P0316650.2 Q. robur
Protein Identifier  ? Qrob_P0316650.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=27) 1.3.3.8 - Tetrahydroberberine oxidase. Code Enzyme  EC:1.3.3.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 531  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_027062 14 525 + 512 Gaps:5 95.48 531 65.48 0.0 FAD-binding Berberine family protein
blastp_kegg lcl|pmum:103325286 1 526 + 526 Gaps:7 91.27 584 64.54 0.0 reticuline oxidase-like protein
blastp_kegg lcl|cic:CICLE_v10014748mg 8 530 + 523 Gaps:5 91.58 570 63.60 0.0 hypothetical protein
blastp_kegg lcl|cit:102618959 8 530 + 523 Gaps:5 91.58 570 63.41 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|csv:101225698 17 528 + 512 Gaps:3 96.61 531 63.16 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|csv:101209166 17 528 + 512 Gaps:3 96.61 531 63.16 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|pop:POPTR_0001s46690g 2 526 + 525 Gaps:12 90.58 584 61.25 0.0 POPTRDRAFT_642620 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10014826mg 8 530 + 523 Gaps:6 96.49 542 62.91 0.0 hypothetical protein
blastp_kegg lcl|cmo:103484297 24 528 + 505 Gaps:3 92.67 546 63.04 0.0 reticuline oxidase-like protein
blastp_kegg lcl|tcc:TCM_027061 6 525 + 520 Gaps:7 79.42 651 63.06 0.0 FAD-binding Berberine family protein
blastp_pdb 3fw9_A 48 525 + 478 Gaps:19 96.36 495 37.95 4e-97 mol:protein length:495 Reticuline oxidase
blastp_pdb 3gsy_A 48 525 + 478 Gaps:19 91.91 519 37.95 9e-97 mol:protein length:519 Reticuline oxidase Berberine bridge-forming
blastp_pdb 3d2j_A 26 525 + 500 Gaps:25 93.87 538 36.83 1e-96 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2h_A 26 525 + 500 Gaps:25 93.87 538 36.83 1e-96 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2d_A 26 525 + 500 Gaps:25 93.87 538 36.83 1e-96 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3fw7_A 48 525 + 478 Gaps:19 95.78 498 37.74 1e-95 mol:protein length:498 Reticuline oxidase
blastp_pdb 3fw8_A 48 525 + 478 Gaps:19 96.36 495 37.74 2e-95 mol:protein length:495 Reticuline oxidase
blastp_pdb 3fwa_A 48 525 + 478 Gaps:19 95.98 497 37.74 2e-95 mol:protein length:497 Reticuline oxidase
blastp_pdb 2y4g_B 67 524 + 458 Gaps:98 89.43 530 29.54 1e-19 mol:protein length:530 TAML
blastp_pdb 2y4g_A 67 524 + 458 Gaps:98 89.43 530 29.54 1e-19 mol:protein length:530 TAML
blastp_uniprot_sprot sp|Q9SVG4|RETOL_ARATH 23 526 + 504 Gaps:8 88.42 570 55.95 0.0 Reticuline oxidase-like protein OS Arabidopsis thaliana GN At4g20830 PE 1 SV 2
blastp_uniprot_sprot sp|A6P6W0|CASL1_CANSA 9 525 + 517 Gaps:20 96.33 545 43.81 6e-146 Cannabidiolic acid synthase-like 1 OS Cannabis sativa GN CBDAS2 PE 2 SV 1
blastp_uniprot_sprot sp|A6P6V9|CBDAS_CANSA 47 525 + 479 Gaps:19 89.71 544 45.70 3e-145 Cannabidiolic acid synthase OS Cannabis sativa GN CBDAS PE 1 SV 1
blastp_uniprot_sprot sp|A6P6W1|CASL2_CANSA 9 525 + 517 Gaps:20 96.33 545 43.62 3e-145 Cannabidiolic acid synthase-like 2 OS Cannabis sativa GN CBDAS3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GTB6|THCAS_CANSA 8 525 + 518 Gaps:19 96.33 545 43.62 4e-144 Tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 1 SV 1
blastp_uniprot_sprot sp|Q33DQ2|THCAI_CANSA 47 525 + 479 Gaps:18 89.72 545 44.58 1e-139 Inactive tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 3 SV 1
blastp_uniprot_sprot sp|P30986|RETO_ESCCA 48 525 + 478 Gaps:19 88.66 538 37.95 6e-96 Reticuline oxidase OS Eschscholzia californica GN BBE1 PE 1 SV 1
blastp_uniprot_sprot sp|P93479|RETO_PAPSO 1 529 + 529 Gaps:39 97.94 535 37.40 7e-96 Reticuline oxidase OS Papaver somniferum GN BBE1 PE 3 SV 1
blastp_uniprot_sprot sp|O06997|YVDP_BACSU 40 525 + 486 Gaps:52 99.33 447 30.41 1e-28 Uncharacterized FAD-linked oxidoreductase YvdP OS Bacillus subtilis (strain 168) GN yvdP PE 1 SV 1
blastp_uniprot_sprot sp|Q796Y5|YGAK_BACSU 40 525 + 486 Gaps:77 98.23 451 28.67 4e-27 Uncharacterized FAD-linked oxidoreductase YgaK OS Bacillus subtilis (strain 168) GN ygaK PE 3 SV 4

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 22 530 509 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 71 137 67 G3DSA:3.30.43.10 none none IPR016167
Gene3D 138 249 112 G3DSA:3.30.465.10 none none IPR016169
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 78 215 138 PF01565 "KEGG:00520+1.3.1.98","KEGG:00550+1.3.1.98","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" FAD binding domain IPR006094
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 17 21 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 6 16 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 5 530 526 PTHR32448 none none none
Gene3D 278 332 55 G3DSA:3.30.1710.10 none none none
SUPERFAMILY 34 249 216 SSF56176 none none IPR016166
Pfam 470 525 56 PF08031 none Berberine and berberine like IPR012951
ProSiteProfiles 74 248 175 PS51387 none PCMH-type FAD-binding domain profile. IPR016166

3 Localization

Analysis Start End Length
SignalP_EUK 1 21 20
SignalP_GRAM_NEGATIVE 1 21 20
SignalP_GRAM_POSITIVE 1 21 20

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting