Protein : Qrob_P0316610.2 Q. robur
Protein Identifier  ? Qrob_P0316610.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=27) 1.3.3.8 - Tetrahydroberberine oxidase. Code Enzyme  EC:1.3.3.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 549  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103325287 5 548 + 544 Gaps:3 98.55 553 79.08 0.0 reticuline oxidase-like protein
blastp_kegg lcl|pper:PRUPE_ppa004317mg 34 548 + 515 Gaps:2 100.00 517 80.85 0.0 hypothetical protein
blastp_kegg lcl|pxb:103952340 5 548 + 544 Gaps:4 99.09 551 76.56 0.0 reticuline oxidase-like protein
blastp_kegg lcl|tcc:TCM_027060 12 548 + 537 Gaps:5 100.00 534 75.84 0.0 FAD-binding Berberine family protein
blastp_kegg lcl|pop:POPTR_0001s47400g 15 541 + 527 Gaps:4 97.94 534 76.67 0.0 POPTRDRAFT_753779 hypothetical protein
blastp_kegg lcl|vvi:100267923 19 548 + 530 Gaps:1 92.00 575 74.29 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|fve:101294830 34 548 + 515 Gaps:1 100.00 516 76.36 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|csv:101227743 32 539 + 508 Gaps:1 94.61 538 71.32 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|csv:101210156 32 539 + 508 Gaps:1 94.61 538 71.51 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|rcu:RCOM_1335350 34 541 + 508 Gaps:1 99.80 510 74.26 0.0 Reticuline oxidase precursor putative (EC:1.21.3.3)
blastp_pdb 3d2j_A 28 542 + 515 Gaps:15 95.17 538 39.45 6e-114 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2h_A 28 542 + 515 Gaps:15 95.17 538 39.45 6e-114 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2d_A 28 542 + 515 Gaps:15 95.17 538 39.45 6e-114 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3fw9_A 66 540 + 475 Gaps:12 95.96 495 41.05 2e-113 mol:protein length:495 Reticuline oxidase
blastp_pdb 3gsy_A 40 542 + 503 Gaps:15 96.34 519 40.00 3e-113 mol:protein length:519 Reticuline oxidase Berberine bridge-forming
blastp_pdb 3fw7_A 40 540 + 501 Gaps:15 100.00 498 39.96 2e-112 mol:protein length:498 Reticuline oxidase
blastp_pdb 3fwa_A 66 541 + 476 Gaps:12 95.77 497 40.76 4e-112 mol:protein length:497 Reticuline oxidase
blastp_pdb 3fw8_A 66 540 + 475 Gaps:12 95.96 495 40.84 6e-112 mol:protein length:495 Reticuline oxidase
blastp_pdb 3rja_A 47 536 + 490 Gaps:68 98.10 473 27.16 1e-28 mol:protein length:473 Carbohydrate oxidase
blastp_pdb 3rj8_A 47 536 + 490 Gaps:68 98.10 473 27.16 1e-28 mol:protein length:473 Carbohydrate oxidase
blastp_uniprot_sprot sp|Q9SVG4|RETOL_ARATH 37 539 + 503 Gaps:8 88.60 570 54.06 0.0 Reticuline oxidase-like protein OS Arabidopsis thaliana GN At4g20830 PE 1 SV 2
blastp_uniprot_sprot sp|Q8GTB6|THCAS_CANSA 20 539 + 520 Gaps:16 97.25 545 46.42 8e-158 Tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 1 SV 1
blastp_uniprot_sprot sp|A6P6W1|CASL2_CANSA 20 539 + 520 Gaps:16 97.25 545 46.23 3e-156 Cannabidiolic acid synthase-like 2 OS Cannabis sativa GN CBDAS3 PE 2 SV 1
blastp_uniprot_sprot sp|A6P6W0|CASL1_CANSA 20 539 + 520 Gaps:16 97.25 545 45.66 4e-156 Cannabidiolic acid synthase-like 1 OS Cannabis sativa GN CBDAS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q33DQ2|THCAI_CANSA 20 539 + 520 Gaps:16 97.25 545 47.17 5e-156 Inactive tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 3 SV 1
blastp_uniprot_sprot sp|A6P6V9|CBDAS_CANSA 41 539 + 499 Gaps:16 93.57 544 48.13 2e-154 Cannabidiolic acid synthase OS Cannabis sativa GN CBDAS PE 1 SV 1
blastp_uniprot_sprot sp|P30986|RETO_ESCCA 28 542 + 515 Gaps:15 95.17 538 39.26 2e-112 Reticuline oxidase OS Eschscholzia californica GN BBE1 PE 1 SV 1
blastp_uniprot_sprot sp|P93479|RETO_PAPSO 11 545 + 535 Gaps:20 98.88 535 39.32 5e-112 Reticuline oxidase OS Papaver somniferum GN BBE1 PE 3 SV 1
blastp_uniprot_sprot sp|O06997|YVDP_BACSU 91 537 + 447 Gaps:65 92.17 447 32.77 6e-24 Uncharacterized FAD-linked oxidoreductase YvdP OS Bacillus subtilis (strain 168) GN yvdP PE 1 SV 1
blastp_uniprot_sprot sp|Q796Y5|YGAK_BACSU 118 539 + 422 Gaps:54 85.59 451 29.27 5e-20 Uncharacterized FAD-linked oxidoreductase YgaK OS Bacillus subtilis (strain 168) GN ygaK PE 3 SV 4

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 18 18 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 31 35 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 35 35 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 480 537 58 PF08031 none Berberine and berberine like IPR012951
Gene3D 149 262 114 G3DSA:3.30.465.10 none none IPR016169
Phobius 19 30 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 12 543 532 PTHR32448 none none none
ProSiteProfiles 87 261 175 PS51387 none PCMH-type FAD-binding domain profile. IPR016166
Gene3D 90 148 59 G3DSA:3.30.43.10 none none IPR016167
Pfam 91 228 138 PF01565 "KEGG:00520+1.3.1.98","KEGG:00550+1.3.1.98","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" FAD binding domain IPR006094
Phobius 36 548 513 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 34 262 229 SSF56176 none none IPR016166

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 35 34

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting