Protein : Qrob_P0316580.2 Q. robur
Protein Identifier  ? Qrob_P0316580.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=27) 1.3.3.8 - Tetrahydroberberine oxidase. Code Enzyme  EC:1.3.3.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 467  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101308451 1 464 + 464 Gaps:65 99.06 534 53.12 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|pop:POPTR_0011s16170g 11 466 + 456 Gaps:66 97.75 534 53.07 0.0 POPTRDRAFT_772214 FAD-binding domain-containing family protein
blastp_kegg lcl|cic:CICLE_v10017768mg 26 466 + 441 Gaps:63 100.00 504 54.76 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_027058 1 466 + 466 Gaps:63 97.96 540 52.74 0.0 FAD-binding Berberine family protein
blastp_kegg lcl|pmum:103325293 1 466 + 466 Gaps:62 99.44 531 52.65 0.0 reticuline oxidase-like protein
blastp_kegg lcl|vvi:100242277 21 465 + 445 Gaps:64 95.86 531 51.67 7e-180 reticuline oxidase-like protein-like
blastp_kegg lcl|rcu:RCOM_1335340 1 463 + 463 Gaps:72 98.12 533 52.20 2e-179 Reticuline oxidase precursor putative (EC:1.21.3.3)
blastp_kegg lcl|vvi:100247412 21 465 + 445 Gaps:64 92.21 552 51.08 1e-178 reticuline oxidase-like protein
blastp_kegg lcl|pper:PRUPE_ppa016588mg 20 466 + 447 Gaps:59 99.41 509 53.16 3e-178 hypothetical protein
blastp_kegg lcl|vvi:100252519 21 465 + 445 Gaps:64 95.86 531 51.47 5e-178 reticuline oxidase-like protein-like
blastp_pdb 3fw8_A 52 464 + 413 Gaps:73 95.76 495 33.54 1e-65 mol:protein length:495 Reticuline oxidase
blastp_pdb 3fw9_A 52 464 + 413 Gaps:73 95.76 495 33.54 2e-65 mol:protein length:495 Reticuline oxidase
blastp_pdb 3fwa_A 52 464 + 413 Gaps:73 95.37 497 33.54 2e-65 mol:protein length:497 Reticuline oxidase
blastp_pdb 3gsy_A 52 464 + 413 Gaps:73 91.33 519 33.54 3e-65 mol:protein length:519 Reticuline oxidase Berberine bridge-forming
blastp_pdb 3d2j_A 52 464 + 413 Gaps:73 88.10 538 33.54 4e-65 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2h_A 52 464 + 413 Gaps:73 88.10 538 33.54 4e-65 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2d_A 52 464 + 413 Gaps:73 88.10 538 33.54 4e-65 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3fw7_A 52 464 + 413 Gaps:73 95.18 498 33.33 6e-64 mol:protein length:498 Reticuline oxidase
blastp_pdb 3rja_A 77 461 + 385 Gaps:82 91.54 473 24.02 4e-12 mol:protein length:473 Carbohydrate oxidase
blastp_pdb 3rj8_A 77 461 + 385 Gaps:82 91.54 473 24.02 4e-12 mol:protein length:473 Carbohydrate oxidase
blastp_uniprot_sprot sp|Q9SVG4|RETOL_ARATH 24 464 + 441 Gaps:64 88.60 570 41.58 1e-118 Reticuline oxidase-like protein OS Arabidopsis thaliana GN At4g20830 PE 1 SV 2
blastp_uniprot_sprot sp|Q8GTB6|THCAS_CANSA 1 465 + 465 Gaps:82 99.27 545 38.63 2e-115 Tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 1 SV 1
blastp_uniprot_sprot sp|A6P6W0|CASL1_CANSA 1 465 + 465 Gaps:88 99.27 545 37.52 7e-115 Cannabidiolic acid synthase-like 1 OS Cannabis sativa GN CBDAS2 PE 2 SV 1
blastp_uniprot_sprot sp|A6P6W1|CASL2_CANSA 1 465 + 465 Gaps:88 99.27 545 37.52 8e-115 Cannabidiolic acid synthase-like 2 OS Cannabis sativa GN CBDAS3 PE 2 SV 1
blastp_uniprot_sprot sp|Q33DQ2|THCAI_CANSA 1 465 + 465 Gaps:80 99.27 545 38.63 5e-114 Inactive tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 3 SV 1
blastp_uniprot_sprot sp|A6P6V9|CBDAS_CANSA 28 465 + 438 Gaps:84 93.75 544 40.20 1e-113 Cannabidiolic acid synthase OS Cannabis sativa GN CBDAS PE 1 SV 1
blastp_uniprot_sprot sp|P30986|RETO_ESCCA 52 464 + 413 Gaps:73 88.10 538 33.54 2e-64 Reticuline oxidase OS Eschscholzia californica GN BBE1 PE 1 SV 1
blastp_uniprot_sprot sp|P93479|RETO_PAPSO 50 464 + 415 Gaps:61 88.97 535 32.56 7e-61 Reticuline oxidase OS Papaver somniferum GN BBE1 PE 3 SV 1
blastp_uniprot_sprot sp|O06997|YVDP_BACSU 77 462 + 386 Gaps:78 92.17 447 27.43 7e-16 Uncharacterized FAD-linked oxidoreductase YvdP OS Bacillus subtilis (strain 168) GN yvdP PE 1 SV 1
blastp_uniprot_sprot sp|P08159|HDNO_ARTOX 44 306 + 263 Gaps:47 62.45 458 25.17 3e-11 6-hydroxy-D-nicotine oxidase OS Arthrobacter oxydans PE 1 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 76 139 64 G3DSA:3.30.43.10 none none IPR016167
Phobius 18 22 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 5 466 462 PTHR32448 none none none
ProSiteProfiles 73 254 182 PS51387 none PCMH-type FAD-binding domain profile. IPR016166
SUPERFAMILY 20 224 205 SSF56176 none none IPR016166
Phobius 6 17 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 23 466 444 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 153 224 72 G3DSA:3.30.465.10 none none IPR016169
Pfam 77 152 76 PF01565 "KEGG:00520+1.3.1.98","KEGG:00550+1.3.1.98","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" FAD binding domain IPR006094
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 407 462 56 PF08031 none Berberine and berberine like IPR012951
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

3 Localization

Analysis Start End Length
SignalP_EUK 1 22 21
SignalP_GRAM_POSITIVE 1 21 20
SignalP_GRAM_NEGATIVE 1 22 21

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting