Protein : Qrob_P0316550.2 Q. robur
Protein Identifier  ? Qrob_P0316550.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=27) 1.3.3.8 - Tetrahydroberberine oxidase. Code Enzyme  EC:1.3.3.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 532  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10017768mg 27 528 + 502 Gaps:2 100.00 504 66.07 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0011s16170g 14 528 + 515 Gaps:5 97.38 534 64.62 0.0 POPTRDRAFT_772214 FAD-binding domain-containing family protein
blastp_kegg lcl|fve:101308451 1 531 + 531 Gaps:5 100.00 534 63.48 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|rcu:RCOM_1335340 1 525 + 525 Gaps:12 98.12 533 64.05 0.0 Reticuline oxidase precursor putative (EC:1.21.3.3)
blastp_kegg lcl|tcc:TCM_019754 4 530 + 527 Gaps:3 98.33 539 59.43 0.0 FAD-binding Berberine family protein isoform 1
blastp_kegg lcl|tcc:TCM_027058 16 528 + 513 Gaps:2 95.37 540 63.69 0.0 FAD-binding Berberine family protein
blastp_kegg lcl|vvi:100242277 22 527 + 506 Gaps:3 95.86 531 62.87 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|vvi:100252519 22 527 + 506 Gaps:3 95.86 531 62.48 0.0 reticuline oxidase-like protein-like
blastp_kegg lcl|pmum:103325293 1 531 + 531 Gaps:12 100.00 531 62.52 0.0 reticuline oxidase-like protein
blastp_kegg lcl|vvi:100247412 22 527 + 506 Gaps:3 92.21 552 62.08 0.0 reticuline oxidase-like protein
blastp_pdb 3fw9_A 53 526 + 474 Gaps:24 95.76 495 37.13 1e-90 mol:protein length:495 Reticuline oxidase
blastp_pdb 3gsy_A 53 526 + 474 Gaps:24 91.33 519 37.13 3e-90 mol:protein length:519 Reticuline oxidase Berberine bridge-forming
blastp_pdb 3d2j_A 53 526 + 474 Gaps:16 88.10 538 36.50 3e-90 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2h_A 53 526 + 474 Gaps:16 88.10 538 36.50 3e-90 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3d2d_A 53 526 + 474 Gaps:16 88.10 538 36.50 3e-90 mol:protein length:538 berberine bridge-forming enzyme
blastp_pdb 3fw7_A 53 526 + 474 Gaps:24 95.18 498 36.92 4e-89 mol:protein length:498 Reticuline oxidase
blastp_pdb 3fw8_A 53 526 + 474 Gaps:24 95.76 495 36.92 4e-89 mol:protein length:495 Reticuline oxidase
blastp_pdb 3fwa_A 53 526 + 474 Gaps:24 95.37 497 36.92 4e-89 mol:protein length:497 Reticuline oxidase
blastp_pdb 3rja_A 78 523 + 446 Gaps:75 91.54 473 27.94 8e-26 mol:protein length:473 Carbohydrate oxidase
blastp_pdb 3rj8_A 78 523 + 446 Gaps:75 91.54 473 27.94 8e-26 mol:protein length:473 Carbohydrate oxidase
blastp_uniprot_sprot sp|Q9SVG4|RETOL_ARATH 25 530 + 506 Gaps:9 89.30 570 49.12 3e-160 Reticuline oxidase-like protein OS Arabidopsis thaliana GN At4g20830 PE 1 SV 2
blastp_uniprot_sprot sp|A6P6V9|CBDAS_CANSA 29 530 + 502 Gaps:17 94.30 544 46.98 1e-153 Cannabidiolic acid synthase OS Cannabis sativa GN CBDAS PE 1 SV 1
blastp_uniprot_sprot sp|A6P6W0|CASL1_CANSA 1 529 + 529 Gaps:22 99.63 545 44.57 3e-150 Cannabidiolic acid synthase-like 1 OS Cannabis sativa GN CBDAS2 PE 2 SV 1
blastp_uniprot_sprot sp|A6P6W1|CASL2_CANSA 1 529 + 529 Gaps:22 99.63 545 44.38 6e-150 Cannabidiolic acid synthase-like 2 OS Cannabis sativa GN CBDAS3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GTB6|THCAS_CANSA 12 527 + 516 Gaps:21 97.43 545 44.26 3e-148 Tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 1 SV 1
blastp_uniprot_sprot sp|Q33DQ2|THCAI_CANSA 12 527 + 516 Gaps:19 97.43 545 43.88 2e-147 Inactive tetrahydrocannabinolic acid synthase OS Cannabis sativa PE 3 SV 1
blastp_uniprot_sprot sp|P93479|RETO_PAPSO 28 526 + 499 Gaps:27 93.08 535 37.15 1e-91 Reticuline oxidase OS Papaver somniferum GN BBE1 PE 3 SV 1
blastp_uniprot_sprot sp|P30986|RETO_ESCCA 53 526 + 474 Gaps:16 88.10 538 36.50 1e-89 Reticuline oxidase OS Eschscholzia californica GN BBE1 PE 1 SV 1
blastp_uniprot_sprot sp|O06997|YVDP_BACSU 78 529 + 452 Gaps:57 92.84 447 32.05 2e-26 Uncharacterized FAD-linked oxidoreductase YvdP OS Bacillus subtilis (strain 168) GN yvdP PE 1 SV 1
blastp_uniprot_sprot sp|Q796Y5|YGAK_BACSU 78 526 + 449 Gaps:62 91.57 451 29.78 3e-22 Uncharacterized FAD-linked oxidoreductase YgaK OS Bacillus subtilis (strain 168) GN ygaK PE 3 SV 4

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 530 530 PTHR32448 none none none
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 31 249 219 SSF56176 none none IPR016166
ProSiteProfiles 74 248 175 PS51387 none PCMH-type FAD-binding domain profile. IPR016166
Gene3D 137 249 113 G3DSA:3.30.465.10 none none IPR016169
Phobius 24 531 508 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 77 136 60 G3DSA:3.30.43.10 none none IPR016167
Phobius 19 23 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 78 215 138 PF01565 "KEGG:00520+1.3.1.98","KEGG:00550+1.3.1.98","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" FAD binding domain IPR006094
Phobius 7 18 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 469 524 56 PF08031 none Berberine and berberine like IPR012951

3 Localization

Analysis Start End Length
SignalP_EUK 1 23 22
SignalP_GRAM_NEGATIVE 1 23 22
SignalP_GRAM_POSITIVE 1 23 22

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting