Protein : Qrob_P0313830.2 Q. robur
Protein Identifier  ? Qrob_P0313830.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K02887 - large subunit ribosomal protein L20 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 126  
Kegg Orthology  K02887
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0019843 rRNA binding Interacting selectively and non-covalently with ribosomal RNA.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103496283 1 125 + 125 none 100.00 125 90.40 2e-79 50S ribosomal protein L20 chloroplastic
blastp_kegg lcl|csv:101227778 1 125 + 125 none 100.00 125 89.60 6e-79 50S ribosomal protein L20-like
blastp_kegg lcl|csv:101216644 1 125 + 125 none 100.00 125 89.60 6e-79 50S ribosomal protein L20-like
blastp_kegg lcl|sot:102601170 1 125 + 125 none 100.00 125 88.80 1e-78 50S ribosomal protein L20 chloroplastic-like
blastp_kegg lcl|sly:101261574 1 125 + 125 none 100.00 125 88.00 2e-78 50S ribosomal protein L20-like
blastp_kegg lcl|cic:CICLE_v10029584mg 1 123 + 123 none 98.40 125 92.68 6e-78 hypothetical protein
blastp_kegg lcl|cit:102623378 1 123 + 123 none 98.40 125 92.68 6e-78 50S ribosomal protein L20 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa023673mg 1 125 + 125 none 100.00 125 90.40 1e-77 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa013387mg 1 125 + 125 none 100.00 125 90.40 1e-77 hypothetical protein
blastp_kegg lcl|tcc:TCM_027603 1 123 + 123 none 98.40 125 91.06 1e-77 Ribosomal protein L20
blastp_pdb 3pip_N 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 3pio_N 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 3dll_N 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 3cf5_N 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S RIBOSOMAL PROTEIN L20
blastp_pdb 2zjr_N 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 2zjq_N 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 2zjp_N 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S RIBOSOMAL PROTEIN L20
blastp_pdb 2b9p_U 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 2b9n_U 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 2b66_U 2 105 + 104 Gaps:1 87.29 118 59.22 1e-33 mol:protein length:118 50S ribosomal protein L20
blastp_uniprot_sprot sp|B6IPJ8|RL20_RHOCS 5 108 + 104 none 87.39 119 61.54 3e-42 50S ribosomal protein L20 OS Rhodospirillum centenum (strain ATCC 51521 / SW) GN rplT PE 3 SV 1
blastp_uniprot_sprot sp|Q3YSX0|RL20_EHRCJ 2 110 + 109 Gaps:1 87.10 124 59.26 3e-40 50S ribosomal protein L20 OS Ehrlichia canis (strain Jake) GN rplT PE 3 SV 1
blastp_uniprot_sprot sp|Q11KK1|RL20_MESSB 5 113 + 109 none 81.95 133 55.96 2e-39 50S ribosomal protein L20 OS Mesorhizobium sp. (strain BNC1) GN rplT PE 3 SV 1
blastp_uniprot_sprot sp|B1ZGB4|RL20_METPB 5 107 + 103 none 85.12 121 55.34 6e-39 50S ribosomal protein L20 OS Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN rplT PE 3 SV 1
blastp_uniprot_sprot sp|B3CRZ0|RL20_ORITI 5 107 + 103 none 85.12 121 57.28 8e-39 50S ribosomal protein L20 OS Orientia tsutsugamushi (strain Ikeda) GN rplT PE 3 SV 1
blastp_uniprot_sprot sp|Q5HC39|RL20_EHRRW 2 110 + 109 Gaps:1 87.80 123 55.56 8e-39 50S ribosomal protein L20 OS Ehrlichia ruminantium (strain Welgevonden) GN rplT PE 3 SV 1
blastp_uniprot_sprot sp|Q5FH69|RL20_EHRRG 2 110 + 109 Gaps:1 87.80 123 55.56 8e-39 50S ribosomal protein L20 OS Ehrlichia ruminantium (strain Gardel) GN rplT PE 3 SV 1
blastp_uniprot_sprot sp|Q73GR7|RL20_WOLPM 5 100 + 96 none 79.34 121 63.54 1e-38 50S ribosomal protein L20 OS Wolbachia pipientis wMel GN rplT PE 3 SV 1
blastp_uniprot_sprot sp|Q2GHR2|RL20_EHRCR 5 106 + 102 none 82.26 124 58.82 2e-38 50S ribosomal protein L20 OS Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) GN rplT PE 3 SV 1
blastp_uniprot_sprot sp|C0R3S6|RL20_WOLWR 5 109 + 105 none 86.78 121 59.05 2e-38 50S ribosomal protein L20 OS Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN rplT PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProDom 9 61 53 PD002389 none RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE none
SUPERFAMILY 2 105 104 SSF74731 none none none
PRINTS 31 60 30 PR00062 none Ribosomal protein L20 signature IPR005813
PRINTS 64 90 27 PR00062 none Ribosomal protein L20 signature IPR005813
PRINTS 1 30 30 PR00062 none Ribosomal protein L20 signature IPR005813
ProSitePatterns 43 59 17 PS00937 none Ribosomal protein L20 signature. IPR005813
TIGRFAM 3 102 100 TIGR01032 none rplT_bact: ribosomal protein bL20 IPR005813
Pfam 3 98 96 PF00453 none Ribosomal protein L20 IPR005813
PANTHER 3 105 103 PTHR10986 none none IPR005813
Gene3D 44 105 62 G3DSA:1.10.1900.20 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting