2 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0006281 | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
| GO:0030915 | Smc5-Smc6 complex | A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans. |
18 Blast
11 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Pfam | 27 | 72 | 46 | PF07574 | none | Nse1 non-SMC component of SMC5-6 complex | IPR011513 |
| Phobius | 1 | 2 | 2 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
| Phobius | 3 | 14 | 12 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
| PANTHER | 34 | 173 | 140 | PTHR20973 | none | none | IPR011513 |
| Phobius | 15 | 22 | 8 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
| SUPERFAMILY | 83 | 134 | 52 | SSF57850 | none | none | none |
| Phobius | 1 | 22 | 22 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
| PANTHER | 34 | 173 | 140 | PTHR20973:SF0 | none | none | none |
| Pfam | 84 | 127 | 44 | PF08746 | none | RING-like domain | IPR014857 |
| Gene3D | 82 | 136 | 55 | G3DSA:3.30.40.10 | none | none | IPR013083 |
| Phobius | 23 | 200 | 178 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
10 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran1_2004_QTL1_peak_Bud_burst_A4 | Qrob_Chr01 | 1 | s_1AMVCC_444 | s_1BE1VC_321 | 4 | 0 | 31 | lod | 3,2 | 7,4 |
| Bourran2_2003_QTL8_peak_Bud_burst_A4 | Qrob_Chr01 | 1 | s_1AH7I_610 | s_1BE1VC_321 | 4,6 | 0 | 28 | lod | 3,5 | 7,4 |
| Bourran2_2007_QTL6_peak_Bud_burst_3P | Qrob_Chr01 | 1 | s_1BE1VC_321 | s_1A5JRZ_890 | 5 | 0 | 25 | lod | 2,4 | 6 |
| Bourran2_2014_nEpiBC_3P | Qrob_Chr01 | 1 | v_1588_550 | s_1AZJRA_1600 | 30,48 | 9,48 | 43,98 | lod | 2,3642 | 6,3 |
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_nSecLBD_3P | Qrob_Chr08 | 8 | s_1BN2OD_551 | s_1B5AYF_599 | 17,17 | 0 | 43,51 | lod | 1,9229 | 4,4 |
| Bourran2_2014_rEpiBC*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 35,77 | 14,11 | 55,31 | lod | 2,9413 | 6,2 |
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
| Bourran2_2015_rEpiBC_3P | Qrob_Chr08 | 8 | s_A9TNV_543 | v_11837_70 | 9,93 | 9,83 | 11,15 | lod | 3.3 | 7.3 |
| Bourran2_2014_nSeqBC*_A4 | Qrob_Chr01 | 1 | s_1CFE4C_2114 | s_1BDNCB_819 | 15,25 | 2 | 28,5 | lod | 2,9903 | 8,3 |
