Protein : Qrob_P0300490.2 Q. robur
Protein Identifier  ? Qrob_P0300490.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR20973 - NON-SMC ELEMENT 1-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 133  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0030915 Smc5-Smc6 complex A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259925 1 132 + 132 none 41.38 319 79.55 2e-69 uncharacterized LOC100259925
blastp_kegg lcl|pper:PRUPE_ppa008870mg 1 132 + 132 none 41.77 316 80.30 4e-69 hypothetical protein
blastp_kegg lcl|pmum:103330281 1 132 + 132 none 40.99 322 79.55 1e-68 uncharacterized LOC103330281
blastp_kegg lcl|mdm:103448161 1 132 + 132 none 41.64 317 77.27 5e-66 uncharacterized LOC103448161
blastp_kegg lcl|cmo:103491611 1 132 + 132 none 42.31 312 75.00 8e-66 non-structural maintenance of chromosomes element 1 homolog
blastp_kegg lcl|csv:101223338 1 132 + 132 none 42.44 311 74.24 3e-65 non-structural maintenance of chromosomes element 1 homolog
blastp_kegg lcl|tcc:TCM_042016 1 132 + 132 none 40.49 326 71.97 8e-65 Embryo defective 1379 putative isoform 1
blastp_kegg lcl|brp:103851401 1 132 + 132 none 41.64 317 71.97 1e-62 non-structural maintenance of chromosomes element 1 homolog
blastp_kegg lcl|crb:CARUB_v10001499mg 1 132 + 132 none 41.90 315 71.21 1e-62 hypothetical protein
blastp_kegg lcl|sot:102585398 1 131 + 131 none 41.72 314 73.28 1e-61 uncharacterized LOC102585398
rpsblast_cdd gnl|CDD|116193 6 121 + 116 Gaps:6 67.78 180 36.07 8e-25 pfam07574 SMC_Nse1 Nse1 non-SMC component of SMC5-6 complex. S. cerevisiae Nse1 forms part of a complex with SMC5-SMC6 This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability being involved in DNA repair and DNA metabolism. It is conserved in eukaryotes from yeast to human.
rpsblast_kog gnl|CDD|39916 3 131 + 129 Gaps:4 55.74 235 22.14 7e-07 KOG4718 KOG4718 KOG4718 Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 129 129 PTHR20973:SF0 none none none
PANTHER 1 129 129 PTHR20973 none none IPR011513
Pfam 6 126 121 PF07574 none Nse1 non-SMC component of SMC5-6 complex IPR011513

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting