Protein : Qrob_P0299620.2 Q. robur
Protein Identifier  ? Qrob_P0299620.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0328//KOG0331//KOG0335//KOG0340//KOG0344//KOG0350//KOG0354//KOG0701//KOG0952//KOG1817 - Predicted ATP-dependent RNA helicase FAL1 involved in rRNA maturation DEAD-box superfamily [Translation ribosomal structure and biogenesis]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // DEAD-box ATP-dependent RNA helicase [RNA processing and modification]. // DEAD-box like helicase [General function prediction only]. // dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]. // DNA/RNA helicase MER3/SLH1 DEAD-box superfamily [RNA processing and modification]. // Ribonuclease [RNA processing and modification]. Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1668  
Kegg Orthology  K11592
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100254311 15 1664 + 1650 Gaps:62 99.39 1648 70.94 0.0 endoribonuclease Dicer homolog 3a-like
blastp_kegg lcl|tcc:TCM_037410 27 1665 + 1639 Gaps:44 99.63 1639 70.61 0.0 Endoribonuclease Dicera putative isoform 2
blastp_kegg lcl|mdm:103455760 27 1665 + 1639 Gaps:37 99.27 1654 68.21 0.0 endoribonuclease Dicer homolog 3a
blastp_kegg lcl|cic:CICLE_v10007239mg 22 1664 + 1643 Gaps:51 98.55 1652 69.04 0.0 hypothetical protein
blastp_kegg lcl|cit:102624402 22 1664 + 1643 Gaps:52 98.55 1653 69.00 0.0 endoribonuclease Dicer homolog 3-like
blastp_kegg lcl|mdm:103420980 27 1665 + 1639 Gaps:42 99.27 1655 67.74 0.0 endoribonuclease Dicer homolog 3a-like
blastp_kegg lcl|pxb:103953044 40 1665 + 1626 Gaps:36 98.61 1653 67.73 0.0 endoribonuclease Dicer homolog 3a-like
blastp_kegg lcl|pxb:103949659 27 1665 + 1639 Gaps:42 99.27 1655 67.80 0.0 endoribonuclease Dicer homolog 3a-like
blastp_kegg lcl|pmum:103320665 27 1665 + 1639 Gaps:42 99.57 1642 69.30 0.0 endoribonuclease Dicer homolog 3
blastp_kegg lcl|fve:101309472 15 1665 + 1651 Gaps:74 99.26 1629 68.46 0.0 endoribonuclease Dicer homolog 3a-like
blastp_pdb 3c4t_A 1244 1404 + 161 Gaps:14 66.04 265 41.14 2e-33 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 1244 1404 + 161 Gaps:14 66.04 265 41.14 2e-33 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 2eb1_C 1244 1404 + 161 Gaps:14 87.50 200 40.00 5e-33 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 1244 1404 + 161 Gaps:14 87.50 200 40.00 5e-33 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 1244 1404 + 161 Gaps:14 87.50 200 40.00 5e-33 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 1wp9_F 42 527 + 486 Gaps:54 96.36 494 26.26 9e-21 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 1wp9_E 42 527 + 486 Gaps:54 96.36 494 26.26 9e-21 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 1wp9_D 42 527 + 486 Gaps:54 96.36 494 26.26 9e-21 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 1wp9_C 42 527 + 486 Gaps:54 96.36 494 26.26 9e-21 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 1wp9_B 42 527 + 486 Gaps:54 96.36 494 26.26 9e-21 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 15 1662 + 1648 Gaps:96 99.58 1651 53.65 0.0 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 16 1664 + 1649 Gaps:129 98.73 1580 54.87 0.0 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 33 1657 + 1625 Gaps:66 98.05 1637 50.84 0.0 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 45 1479 + 1435 Gaps:238 80.24 1883 35.61 0.0 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 47 1421 + 1375 Gaps:160 94.16 1388 36.80 0.0 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|A7LFZ6|DCL4_ORYSJ 36 1662 + 1627 Gaps:191 98.61 1657 33.23 0.0 Endoribonuclease Dicer homolog 4 OS Oryza sativa subsp. japonica GN DCL4 PE 2 SV 1
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 47 1662 + 1616 Gaps:147 92.66 1702 33.35 0.0 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 47 1428 + 1382 Gaps:144 93.33 1410 35.64 0.0 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 47 1428 + 1382 Gaps:176 93.25 1377 35.12 0.0 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 45 1653 + 1609 Gaps:230 83.60 1909 36.40 2e-122 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 1030 1201 172 PS50142 none Ribonuclease III family domain profile. IPR000999
Pfam 49 206 158 PF00270 none DEAD/DEAH box helicase IPR011545
ProSiteProfiles 1242 1386 145 PS50142 none Ribonuclease III family domain profile. IPR000999
ProSiteProfiles 892 974 83 PS50821 none PAZ domain profile. IPR003100
ProSitePatterns 1278 1286 9 PS00517 none Ribonuclease III family signature. IPR000999
SMART 1257 1409 153 SM00535 none Ribonuclease III family IPR000999
SMART 1048 1221 174 SM00535 none Ribonuclease III family IPR000999
Pfam 432 504 73 PF00271 none Helicase conserved C-terminal domain IPR001650
Pfam 1066 1200 135 PF00636 none Ribonuclease III domain IPR000999
Pfam 1278 1385 108 PF00636 none Ribonuclease III domain IPR000999
Gene3D 1241 1405 165 G3DSA:1.10.1520.10 none none IPR000999
ProSiteProfiles 575 665 91 PS51327 none Dicer double-stranded RNA-binding fold domain profile. IPR005034
Pfam 886 1025 140 PF02170 none PAZ domain IPR003100
SUPERFAMILY 1022 1135 114 SSF69065 none none IPR000999
SUPERFAMILY 1181 1219 39 SSF69065 none none IPR000999
Gene3D 891 1001 111 G3DSA:2.170.260.10 none none none
PANTHER 10 851 842 PTHR14950:SF3 none none none
PANTHER 875 1509 635 PTHR14950:SF3 none none none
Gene3D 44 206 163 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 390 545 156 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
SMART 865 1029 165 SM00949 none none IPR003100
Gene3D 1046 1123 78 G3DSA:1.10.1520.10 none none IPR000999
Gene3D 1169 1215 47 G3DSA:1.10.1520.10 none none IPR000999
SMART 42 232 191 SM00487 none DEAD-like helicases superfamily IPR014001
PANTHER 10 851 842 PTHR14950 none none none
PANTHER 875 1509 635 PTHR14950 none none none
Pfam 575 661 87 PF03368 none Dicer dimerisation domain IPR005034
ProSiteProfiles 53 207 155 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
SMART 420 507 88 SM00490 none helicase superfamily c-terminal domain IPR001650
SUPERFAMILY 93 227 135 SSF52540 none none IPR027417

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting