Protein : Qrob_P0297860.2 Q. robur
Protein Identifier  ? Qrob_P0297860.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) KOG0263//KOG0266//KOG0271//KOG0272//KOG0274//KOG0276//KOG0284//KOG0305//KOG0310//KOG0319 - Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]. // WD40 repeat-containing protein [General function prediction only]. // Notchless-like WD40 repeat-containing protein [Function unknown]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // Cdc4 and related F-box and WD-40 proteins [General function prediction only]. // Vesicle coat complex COPI beta' subunit [Intracellular trafficking secretion and vesicular transport]. // Polyadenylation factor I complex subunit PFS2 [RNA processing and modification]. // Anaphase promoting complex Cdc20 Cdh1 and Ama1 subunits [Cell cycle control cell division chromosome partitioning Posttranslational modification protein turnover chaperones]. // Conserved WD40 repeat-containing protein [Function unknown]. // WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 525  
Kegg Orthology  K14549
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0005730 nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101229785 1 523 + 523 Gaps:11 100.00 528 75.76 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|csv:101220388 1 523 + 523 Gaps:11 100.00 528 75.76 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|pper:PRUPE_ppa003776mg 24 523 + 500 Gaps:25 95.45 550 75.62 0.0 hypothetical protein
blastp_kegg lcl|pmum:103322321 24 523 + 500 Gaps:25 95.45 550 75.05 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|cic:CICLE_v10019671mg 20 523 + 504 Gaps:2 94.74 532 75.99 0.0 hypothetical protein
blastp_kegg lcl|cit:102621396 20 523 + 504 Gaps:2 94.74 532 75.99 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|pop:POPTR_0014s13130g 10 523 + 514 Gaps:3 96.44 534 77.48 0.0 POPTRDRAFT_774857 transducin family protein
blastp_kegg lcl|cmo:103492718 1 523 + 523 Gaps:11 100.00 528 75.19 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|vvi:100264761 1 523 + 523 Gaps:6 99.81 528 73.62 0.0 U3 small nucleolar RNA-associated protein 15 homolog-like
blastp_kegg lcl|tcc:TCM_004505 11 523 + 513 Gaps:9 96.47 539 77.12 0.0 Transducin family protein / WD-40 repeat family protein
blastp_pdb 2xl3_B 45 339 + 295 Gaps:23 75.75 334 40.71 4e-20 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl3_A 45 339 + 295 Gaps:23 75.75 334 40.71 4e-20 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_B 45 339 + 295 Gaps:23 75.75 334 40.71 4e-20 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_A 45 339 + 295 Gaps:23 75.75 334 40.71 4e-20 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2gnq_A 45 339 + 295 Gaps:23 75.30 336 40.71 5e-20 mol:protein length:336 WD-repeat protein 5
blastp_pdb 3mxx_A 45 339 + 295 Gaps:23 80.32 315 40.71 7e-20 mol:protein length:315 WD repeat-containing protein 5
blastp_pdb 3emh_A 45 339 + 295 Gaps:23 79.56 318 40.32 8e-20 mol:protein length:318 WD repeat-containing protein 5
blastp_pdb 4ery_A 45 339 + 295 Gaps:23 81.09 312 40.71 1e-19 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 4erq_C 45 339 + 295 Gaps:23 81.09 312 40.71 1e-19 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 4erq_B 45 339 + 295 Gaps:23 81.09 312 40.71 1e-19 mol:protein length:312 WD repeat-containing protein 5
blastp_uniprot_sprot sp|Q5XGE2|UTP15_XENTR 6 518 + 513 Gaps:30 95.34 515 35.03 1e-94 U3 small nucleolar RNA-associated protein 15 homolog OS Xenopus tropicalis GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q5F3D7|UTP15_CHICK 6 518 + 513 Gaps:31 94.23 520 35.31 4e-93 U3 small nucleolar RNA-associated protein 15 homolog OS Gallus gallus GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZXZ2|UTP15_XENLA 6 518 + 513 Gaps:30 95.34 515 35.03 4e-92 U3 small nucleolar RNA-associated protein 15 homolog OS Xenopus laevis GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|A7MB12|UTP15_BOVIN 8 523 + 516 Gaps:31 94.99 519 35.50 3e-91 U3 small nucleolar RNA-associated protein 15 homolog OS Bos taurus GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|Q8TED0|UTP15_HUMAN 8 518 + 511 Gaps:31 94.21 518 35.86 4e-91 U3 small nucleolar RNA-associated protein 15 homolog OS Homo sapiens GN UTP15 PE 1 SV 3
blastp_uniprot_sprot sp|A2RRU3|UTP15_RAT 23 524 + 502 Gaps:30 90.91 528 36.25 6e-91 U3 small nucleolar RNA-associated protein 15 homolog OS Rattus norvegicus GN Utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q8C7V3|UTP15_MOUSE 23 524 + 502 Gaps:30 90.91 528 36.04 4e-90 U3 small nucleolar RNA-associated protein 15 homolog OS Mus musculus GN Utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q5REE0|UTP15_PONAB 8 518 + 511 Gaps:31 94.21 518 35.66 2e-88 U3 small nucleolar RNA-associated protein 15 homolog OS Pongo abelii GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZW33|UTP15_DANRE 6 518 + 513 Gaps:31 94.78 517 35.51 1e-83 U3 small nucleolar RNA-associated protein 15 homolog OS Danio rerio GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|O94365|UTP15_SCHPO 1 517 + 517 Gaps:37 99.60 494 33.54 9e-81 U3 small nucleolar RNA-associated protein 15 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN utp15 PE 3 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 186 200 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
Pfam 161 199 39 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 212 241 30 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 118 156 39 PF00400 none WD domain, G-beta repeat IPR001680
SUPERFAMILY 35 334 300 SSF50978 none none IPR017986
ProSiteProfiles 39 302 264 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
PANTHER 23 523 501 PTHR19924 none none none
Gene3D 44 333 290 G3DSA:2.130.10.10 none none IPR015943
SMART 116 156 41 SM00320 none WD40 repeats IPR001680
SMART 74 113 40 SM00320 none WD40 repeats IPR001680
SMART 32 71 40 SM00320 none WD40 repeats IPR001680
SMART 159 199 41 SM00320 none WD40 repeats IPR001680
SMART 245 293 49 SM00320 none WD40 repeats IPR001680
SMART 204 241 38 SM00320 none WD40 repeats IPR001680
ProSiteProfiles 166 201 36 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PRINTS 143 157 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 228 242 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 186 200 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
ProSiteProfiles 123 165 43 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Pfam 371 516 146 PF09384 none UTP15 C terminal IPR018983

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting