Protein : Qrob_P0297200.2 Q. robur
Protein Identifier  ? Qrob_P0297200.2 Organism . Name  Quercus robur
Score  61.3 Score Type  egn
Protein Description  (M=1) PF00125//PF13893 - Core histone H2A/H2B/H3/H4 // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 214  
Kegg Orthology  K11252
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101218225 1 148 + 148 Gaps:1 96.71 152 94.56 1e-83 probable histone H2B.1-like
blastp_kegg lcl|cmo:103490588 1 148 + 148 Gaps:1 96.71 152 93.88 3e-83 histone H2B
blastp_kegg lcl|mtr:MTR_4g063240 1 148 + 148 Gaps:6 96.60 147 94.37 7e-83 Histone H2B
blastp_kegg lcl|mtr:MTR_4g063200 1 148 + 148 Gaps:5 96.62 148 94.41 5e-80 Histone H2B
blastp_kegg lcl|mtr:MTR_4g063220 1 148 + 148 Gaps:5 96.62 148 94.41 5e-80 Histone H2B
blastp_kegg lcl|mtr:MTR_4g071180 1 148 + 148 Gaps:5 96.62 148 94.41 4e-79 Histone H2B
blastp_kegg lcl|eus:EUTSA_v10002699mg 1 148 + 148 Gaps:2 96.69 151 89.73 2e-78 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_484977 1 148 + 148 Gaps:3 96.67 150 91.72 4e-78 hypothetical protein
blastp_kegg lcl|ath:AT3G45980 1 148 + 148 Gaps:3 96.67 150 91.72 4e-78 HTB9 histone HTB9
blastp_kegg lcl|eus:EUTSA_v10014927mg 1 148 + 148 Gaps:3 96.67 150 92.41 8e-78 hypothetical protein
blastp_pdb 3c9k_F 28 148 + 121 Gaps:5 92.80 125 73.28 4e-50 mol:protein length:125 Histone H2B 7
blastp_pdb 3c9k_B 28 148 + 121 Gaps:5 92.80 125 73.28 4e-50 mol:protein length:125 Histone H2B 7
blastp_pdb 3azn_H 28 148 + 121 Gaps:9 89.92 129 75.00 2e-48 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azn_D 28 148 + 121 Gaps:9 89.92 129 75.00 2e-48 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azm_H 28 148 + 121 Gaps:9 89.92 129 75.00 2e-48 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azm_D 28 148 + 121 Gaps:9 89.92 129 75.00 2e-48 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azl_H 28 148 + 121 Gaps:9 89.92 129 75.00 2e-48 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azl_D 28 148 + 121 Gaps:9 89.92 129 75.00 2e-48 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azk_H 28 148 + 121 Gaps:9 89.92 129 75.00 2e-48 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azk_D 28 148 + 121 Gaps:9 89.92 129 75.00 2e-48 mol:protein length:129 Histone H2B type 1-J
blastp_uniprot_sprot sp|O22582|H2B_GOSHI 1 148 + 148 Gaps:6 96.60 147 97.18 6e-88 Histone H2B OS Gossypium hirsutum GN HIS2B PE 2 SV 3
blastp_uniprot_sprot sp|Q1S9I9|H2B1_MEDTR 1 148 + 148 Gaps:5 96.62 148 94.41 2e-80 Probable histone H2B.1 OS Medicago truncatula PE 1 SV 3
blastp_uniprot_sprot sp|O23629|H2B6_ARATH 1 148 + 148 Gaps:3 96.67 150 91.72 1e-79 Histone H2B.6 OS Arabidopsis thaliana GN H2B PE 1 SV 3
blastp_uniprot_sprot sp|Q1SWQ1|H2B2_MEDTR 1 148 + 148 Gaps:5 96.62 148 93.01 4e-79 Probable histone H2B.2 OS Medicago truncatula PE 3 SV 3
blastp_uniprot_sprot sp|P93354|H2B_TOBAC 1 148 + 148 Gaps:7 96.58 146 85.82 5e-76 Histone H2B OS Nicotiana tabacum GN HIS2B PE 2 SV 3
blastp_uniprot_sprot sp|Q9SI96|H2B3_ARATH 1 148 + 148 Gaps:2 96.69 151 89.73 8e-76 Histone H2B.3 OS Arabidopsis thaliana GN At2g28720 PE 1 SV 3
blastp_uniprot_sprot sp|Q9LQQ4|H2B1_ARATH 1 148 + 148 Gaps:5 96.62 148 89.51 2e-74 Histone H2B.1 OS Arabidopsis thaliana GN At1g07790 PE 1 SV 3
blastp_uniprot_sprot sp|P40283|H2B11_ARATH 16 148 + 133 Gaps:3 86.67 150 93.85 2e-71 Histone H2B.11 OS Arabidopsis thaliana GN At5g59910 PE 1 SV 5
blastp_uniprot_sprot sp|O65819|H2B3_SOLLC 8 148 + 141 Gaps:9 96.35 137 93.94 3e-71 Histone H2B.3 (Fragment) OS Solanum lycopersicum GN H2B-3 PE 2 SV 1
blastp_uniprot_sprot sp|O49118|H2B_CAPAN 1 148 + 148 Gaps:8 96.55 145 89.29 7e-70 Histone H2B OS Capsicum annuum GN HIS2B PE 2 SV 3

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 143 181 39 SSF54928 none none none
Gene3D 33 146 114 G3DSA:1.10.20.10 none none IPR009072
PRINTS 107 124 18 PR00621 none Histone H2B signature IPR000558
PRINTS 85 105 21 PR00621 none Histone H2B signature IPR000558
PRINTS 137 150 14 PR00621 none Histone H2B signature IPR000558
PRINTS 66 84 19 PR00621 none Histone H2B signature IPR000558
PRINTS 124 137 14 PR00621 none Histone H2B signature IPR000558
PANTHER 2 146 145 PTHR23428 none none IPR000558
Pfam 146 179 34 PF13893 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) none
Pfam 62 129 68 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
SUPERFAMILY 37 146 110 SSF47113 none none IPR009072
SMART 56 152 97 SM00427 none Histone H2B IPR000558
ProSitePatterns 121 143 23 PS00357 none Histone H2B signature. IPR000558

0 Localization

0 Qtllist

0 Targeting