2 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0003824 | catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
| GO:0009116 | nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). |
12 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pop:POPTR_0008s02860g | 17 | 200 | + | 184 | Gaps:32 | 65.06 | 332 | 54.63 | 2e-71 | hypothetical protein |
| blastp_kegg | lcl|vvi:100259215 | 1 | 200 | + | 200 | Gaps:33 | 65.59 | 340 | 52.47 | 3e-70 | bark storage protein A-like |
| blastp_kegg | lcl|tcc:TCM_043458 | 1 | 199 | + | 199 | Gaps:36 | 61.90 | 357 | 52.49 | 8e-70 | Phosphorylase family protein isoform 1 |
| blastp_kegg | lcl|tcc:TCM_043459 | 31 | 200 | + | 170 | Gaps:29 | 59.05 | 337 | 55.28 | 1e-69 | Phosphorylase superfamily protein |
| blastp_kegg | lcl|rcu:RCOM_0008400 | 1 | 200 | + | 200 | Gaps:35 | 70.35 | 317 | 52.02 | 4e-69 | mta/sah nucleosidase putative |
| blastp_kegg | lcl|pper:PRUPE_ppa023149mg | 1 | 200 | + | 200 | Gaps:37 | 65.57 | 334 | 50.23 | 3e-63 | hypothetical protein |
| blastp_kegg | lcl|pmum:103332292 | 1 | 200 | + | 200 | Gaps:36 | 63.77 | 345 | 49.09 | 1e-62 | bark storage protein A-like |
| blastp_kegg | lcl|pmum:103332460 | 1 | 200 | + | 200 | Gaps:38 | 63.77 | 345 | 49.55 | 4e-60 | bark storage protein A-like |
| blastp_kegg | lcl|pop:POPTR_0008s02870g | 1 | 200 | + | 200 | Gaps:34 | 65.88 | 340 | 47.77 | 1e-58 | hypothetical protein |
| blastp_kegg | lcl|sot:102584019 | 1 | 200 | + | 200 | Gaps:31 | 65.60 | 343 | 45.33 | 4e-57 | bark storage protein A-like |
| blastp_uniprot_sprot | sp|Q07469|BSPA_POPDE | 81 | 196 | + | 116 | Gaps:10 | 35.26 | 312 | 29.09 | 1e-08 | Bark storage protein A OS Populus deltoides GN BSPA PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q09117|BSPB_POPDE | 77 | 196 | + | 120 | Gaps:9 | 36.22 | 312 | 27.43 | 3e-07 | Bark storage protein B OS Populus deltoides GN BSP PE 1 SV 1 |
11 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | 85 | 129 | 45 | SSF53167 | none | none | IPR000845 |
| Phobius | 32 | 201 | 170 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 1 | 9 | 9 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
| Phobius | 1 | 31 | 31 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
| Phobius | 24 | 31 | 8 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
| Pfam | 84 | 144 | 61 | PF01048 | none | Phosphorylase superfamily | IPR000845 |
| PANTHER | 86 | 200 | 115 | PTHR21234 | none | none | IPR018017 |
| Gene3D | 177 | 196 | 20 | G3DSA:3.40.50.1580 | none | none | IPR000845 |
| Gene3D | 85 | 137 | 53 | G3DSA:3.40.50.1580 | none | none | IPR000845 |
| Phobius | 10 | 23 | 14 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
| PANTHER | 86 | 200 | 115 | PTHR21234:SF19 | none | none | none |
8 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nSecLBD_3P | Qrob_Chr08 | 8 | s_1BN2OD_551 | s_1B5AYF_599 | 17,17 | 0 | 43,51 | lod | 1,9229 | 4,4 |
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
| Bourran2_2014_nLBD*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,25 | 0 | 35,55 | lod | 2,5951 | 6 |
| Bourran2_2014_nP*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,19 | 0 | 31,97 | lod | 2,8472 | 6 |
| Bourran2_2014_nPriLBD_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,36 | 0 | 30,43 | lod | 2,5806 | 5,1 |
| Champenoux_2015_nSeqBC_A4 | Qrob_Chr08 | 8 | v_AD7YD13_501 | s_1A7IED_780 | 43,44 | 43,42 | 43,99 | lod | 3.7 | 8.9 |
| Bourran2_2014_nEpis*_3P | Qrob_Chr08 | 8 | s_1DA4QW_688 | s_1DNI7D_820 | 17,96 | 0 | 37,75 | lod | 2,9745 | 7,5 |
| Bourran2_2014_nPriBD_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 5,54 | 0,4 | 20,6 | lod | 2,6345 | 5,9 |
