Protein : Qrob_P0296720.2 Q. robur
Protein Identifier  ? Qrob_P0296720.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) 3.4.24.23 - Matrilysin. Code Enzyme  EC:3.4.24.23
Gene Prediction Quality  validated Protein length 

Sequence

Length: 191  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals and bacteria) or be part of the cell (as in plants).
GO:0008237 metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0013s10410g 1 172 + 172 Gaps:29 64.14 304 43.59 2e-43 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s03350g 1 172 + 172 Gaps:40 65.38 312 43.14 6e-43 POPTRDRAFT_241047 hypothetical protein
blastp_kegg lcl|zma:100285384 1 173 + 173 Gaps:32 56.16 365 41.46 2e-41 metalloendoproteinase 1
blastp_kegg lcl|bdi:100828046 1 173 + 173 Gaps:31 53.26 383 42.65 2e-41 metalloendoproteinase 1-like
blastp_kegg lcl|zma:100274259 1 173 + 173 Gaps:36 56.49 370 41.15 2e-41 hypothetical protein
blastp_kegg lcl|sbi:SORBI_04g028370 1 173 + 173 Gaps:35 56.52 368 41.83 2e-41 SORBIDRAFT_04g028370 Sb04g028370 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa022514mg 1 170 + 170 Gaps:28 59.46 296 49.43 2e-41 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa014830mg 1 170 + 170 Gaps:28 60.14 296 47.75 3e-41 hypothetical protein
blastp_kegg lcl|pmum:103330192 1 170 + 170 Gaps:41 62.74 314 46.70 4e-41 metalloendoproteinase 1-like
blastp_kegg lcl|obr:102718240 1 173 + 173 Gaps:34 55.50 373 40.58 5e-41 metalloendoproteinase 1-like
blastp_pdb 1su3_B 1 182 + 182 Gaps:40 41.78 450 38.83 1e-24 mol:protein length:450 Interstitial collagenase
blastp_pdb 1su3_A 1 182 + 182 Gaps:40 41.78 450 38.83 1e-24 mol:protein length:450 Interstitial collagenase
blastp_pdb 1bzs_A 21 172 + 152 Gaps:29 100.00 165 39.39 2e-23 mol:protein length:165 NEUTROPHIL COLLAGENASE
blastp_pdb 2ddy_A 21 171 + 151 Gaps:26 95.38 173 40.00 2e-23 mol:protein length:173 Matrilysin
blastp_pdb 1mmr_A 21 171 + 151 Gaps:26 97.06 170 40.00 3e-23 mol:protein length:170 MATRILYSIN
blastp_pdb 1mmq_A 21 171 + 151 Gaps:26 97.06 170 40.00 3e-23 mol:protein length:170 MATRILYSIN
blastp_pdb 1mmp_B 21 171 + 151 Gaps:26 97.06 170 40.00 3e-23 mol:protein length:170 GELATINASE A
blastp_pdb 1mmp_A 21 171 + 151 Gaps:26 97.06 170 40.00 3e-23 mol:protein length:170 GELATINASE A
blastp_pdb 2y6c_A 21 170 + 150 Gaps:26 99.39 165 40.24 3e-23 mol:protein length:165 MATRILYSIN
blastp_pdb 2y6d_A 21 171 + 151 Gaps:26 94.83 174 40.00 3e-23 mol:protein length:174 MATRILYSIN
blastp_uniprot_sprot sp|P29136|MEP1_SOYBN 4 173 + 170 Gaps:30 63.61 305 41.24 1e-30 Metalloendoproteinase 1 OS Glycine max PE 1 SV 2
blastp_uniprot_sprot sp|P09237|MMP7_HUMAN 1 170 + 170 Gaps:33 66.29 267 41.24 2e-26 Matrilysin OS Homo sapiens GN MMP7 PE 1 SV 1
blastp_uniprot_sprot sp|P57748|MMP20_MOUSE 1 176 + 176 Gaps:36 37.76 482 37.91 5e-26 Matrix metalloproteinase-20 OS Mus musculus GN Mmp20 PE 2 SV 1
blastp_uniprot_sprot sp|O60882|MMP20_HUMAN 1 176 + 176 Gaps:36 37.68 483 39.01 4e-25 Matrix metalloproteinase-20 OS Homo sapiens GN MMP20 PE 1 SV 3
blastp_uniprot_sprot sp|P21692|MMP1_PIG 1 180 + 180 Gaps:39 39.45 469 41.08 1e-24 Interstitial collagenase OS Sus scrofa GN MMP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q10835|MMP13_XENLA 1 174 + 174 Gaps:36 38.38 469 40.00 1e-24 Collagenase 3 (Fragment) OS Xenopus laevis GN mmp13 PE 2 SV 1
blastp_uniprot_sprot sp|P50280|MMP7_RAT 1 176 + 176 Gaps:33 68.54 267 39.34 1e-24 Matrilysin OS Rattus norvegicus GN Mmp7 PE 2 SV 1
blastp_uniprot_sprot sp|O70138|MMP8_MOUSE 1 179 + 179 Gaps:38 40.22 465 40.64 1e-24 Neutrophil collagenase OS Mus musculus GN Mmp8 PE 2 SV 2
blastp_uniprot_sprot sp|O18927|MMP13_HORSE 1 170 + 170 Gaps:36 37.29 472 42.61 2e-24 Collagenase 3 OS Equus caballus GN MMP13 PE 2 SV 1
blastp_uniprot_sprot sp|P22894|MMP8_HUMAN 1 180 + 180 Gaps:37 40.04 467 40.11 3e-24 Neutrophil collagenase OS Homo sapiens GN MMP8 PE 1 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 48 171 124 PF00413 none Matrixin IPR001818
PANTHER 1 170 170 PTHR10201 none none none
SMART 26 172 147 SM00235 none Zinc-dependent metalloprotease IPR006026
SUPERFAMILY 23 171 149 SSF55486 none none none
Gene3D 1 174 174 G3DSA:3.40.390.10 none none IPR024079
PRINTS 1 11 11 PR00138 none Matrixin signature IPR021190
PRINTS 124 149 26 PR00138 none Matrixin signature IPR021190
PRINTS 158 171 14 PR00138 none Matrixin signature IPR021190
PRINTS 64 92 29 PR00138 none Matrixin signature IPR021190

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting