Protein : Qrob_P0291940.2 Q. robur
Protein Identifier  ? Qrob_P0291940.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K05544 - tRNA-dihydrouridine synthase 3 [EC:1.-.-.-] Code Enzyme  EC:1.3.1.89
Gene Prediction Quality  validated Protein length 

Sequence

Length: 456  
Kegg Orthology  K05544
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0008033 tRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO:0017150 tRNA dihydrouridine synthase activity Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335589 27 435 + 409 Gaps:13 61.90 685 64.62 9e-150 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_kegg lcl|pper:PRUPE_ppa002335mg 27 435 + 409 Gaps:14 61.95 686 64.94 5e-148 hypothetical protein
blastp_kegg lcl|pxb:103966948 27 435 + 409 Gaps:22 61.39 676 65.78 7e-144 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_kegg lcl|mdm:103445154 27 435 + 409 Gaps:28 61.39 676 66.27 2e-143 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_kegg lcl|cit:102621230 14 435 + 422 Gaps:19 62.68 694 61.84 2e-136 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_kegg lcl|cic:CICLE_v10027934mg 14 435 + 422 Gaps:20 62.63 693 62.44 1e-135 hypothetical protein
blastp_kegg lcl|csv:101215945 32 435 + 404 Gaps:20 60.46 698 61.37 8e-131 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_kegg lcl|fve:101297891 44 435 + 392 Gaps:36 61.52 699 61.40 1e-128 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_kegg lcl|cmo:103490332 33 435 + 403 Gaps:25 61.65 691 60.80 2e-127 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_kegg lcl|gmx:100783494 31 435 + 405 Gaps:13 57.65 706 63.64 6e-127 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
blastp_uniprot_sprot sp|Q9T0J6|DUS3L_ARATH 32 435 + 404 Gaps:32 59.62 691 57.52 4e-98 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS Arabidopsis thaliana GN At4g38890 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XT07|DUS3L_ORYSJ 46 435 + 390 Gaps:53 56.06 685 54.17 2e-82 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS Oryza sativa subsp. japonica GN Os04g0117600 PE 2 SV 2
blastp_uniprot_sprot sp|Q9UTH9|DUS3_SCHPO 92 425 + 334 Gaps:76 44.73 617 35.87 4e-28 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN dus3 PE 3 SV 1
blastp_uniprot_sprot sp|A8NZY7|DUS3_COPC7 54 435 + 382 Gaps:107 58.14 676 34.10 6e-23 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN DUS3 PE 3 SV 1
blastp_uniprot_sprot sp|Q7ZWS1|DUS3L_XENLA 92 435 + 344 Gaps:22 41.56 640 48.87 2e-21 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS Xenopus laevis GN dus3l PE 2 SV 1
blastp_uniprot_sprot sp|Q6FJ14|DUS3_CANGA 102 435 + 334 Gaps:74 44.84 640 36.59 4e-21 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN DUS3 PE 3 SV 1
blastp_uniprot_sprot sp|Q28BT8|DUS3L_XENTR 85 435 + 351 Gaps:21 53.36 639 41.06 1e-20 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS Xenopus tropicalis GN dus3l PE 2 SV 2
blastp_uniprot_sprot sp|A1CNY3|DUS3_ASPCL 3 394 + 392 Gaps:119 46.02 728 32.24 3e-20 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN dus3 PE 3 SV 1
blastp_uniprot_sprot sp|A7TQ73|DUS3_VANPO 37 435 + 399 Gaps:84 54.82 664 34.07 1e-19 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN DUS3 PE 3 SV 1
blastp_uniprot_sprot sp|Q96G46|DUS3L_HUMAN 114 437 + 324 Gaps:12 37.69 650 48.57 3e-18 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS Homo sapiens GN DUS3L PE 1 SV 2
rpsblast_cdd gnl|CDD|73368 356 432 + 77 Gaps:12 28.14 231 40.00 9e-09 cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5 6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities which may overlap. 1VHN a putative flavin oxidoreductase has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present..
rpsblast_kog gnl|CDD|37544 40 435 + 396 Gaps:79 56.35 614 43.93 1e-53 KOG2333 KOG2333 KOG2333 Uncharacterized conserved protein [General function prediction only].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 298 394 97 PTHR11082:SF8 none none none
Gene3D 352 394 43 G3DSA:3.20.20.70 none none IPR013785
PANTHER 298 394 97 PTHR11082 none none IPR001269
Gene3D 113 140 28 G3DSA:4.10.1000.10 none none IPR000571
SUPERFAMILY 356 394 39 SSF51395 none none none
ProSiteProfiles 109 140 32 PS50103 none Zinc finger C3H1-type profile. IPR000571

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1

0 Targeting