Protein : Qrob_P0291000.2 Q. robur
Protein Identifier  ? Qrob_P0291000.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR23430//PTHR23430:SF15 - HISTONE H2A // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 142  
Kegg Orthology  K11251
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103427412 1 141 + 141 none 100.00 141 89.36 5e-87 histone H2AX-like
blastp_kegg lcl|pmum:103344700 1 141 + 141 none 100.00 141 87.23 4e-85 histone H2AX
blastp_kegg lcl|pper:PRUPE_ppa013072mg 1 141 + 141 none 100.00 141 87.23 4e-85 hypothetical protein
blastp_kegg lcl|pxb:103928346 1 141 + 141 none 100.00 141 85.82 1e-84 histone H2AX-like
blastp_kegg lcl|mdm:103408563 1 141 + 141 none 100.00 141 85.82 1e-84 histone H2AX-like
blastp_kegg lcl|mdm:103433996 1 141 + 141 none 100.00 141 85.82 1e-84 histone H2AX-like
blastp_kegg lcl|fve:101308981 1 141 + 141 none 100.00 141 86.52 7e-84 probable histone H2AXa-like
blastp_kegg lcl|pop:POPTR_0369s00210g 7 141 + 135 none 95.07 142 88.89 9e-84 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s04260g 7 141 + 135 none 95.07 142 88.89 9e-84 histone H2A family protein
blastp_kegg lcl|pvu:PHAVU_001G146100g 1 141 + 141 Gaps:2 100.00 143 88.11 1e-83 hypothetical protein
blastp_pdb 1id3_G 23 130 + 108 none 82.44 131 78.70 2e-58 mol:protein length:131 HISTONE H2A.1
blastp_pdb 1id3_C 23 130 + 108 none 82.44 131 78.70 2e-58 mol:protein length:131 HISTONE H2A.1
blastp_pdb 2aro_E 10 126 + 117 Gaps:3 88.37 129 73.68 8e-55 mol:protein length:129 Histone H2A-IV
blastp_pdb 2aro_A 10 126 + 117 Gaps:3 88.37 129 73.68 8e-55 mol:protein length:129 Histone H2A-IV
blastp_pdb 1tzy_E 10 126 + 117 Gaps:3 88.37 129 73.68 8e-55 mol:protein length:129 Histone H2A-IV
blastp_pdb 1tzy_A 10 126 + 117 Gaps:3 88.37 129 73.68 8e-55 mol:protein length:129 Histone H2A-IV
blastp_pdb 1hq3_E 10 126 + 117 Gaps:3 88.37 129 73.68 8e-55 mol:protein length:129 HISTONE H2A-IV
blastp_pdb 1hq3_A 10 126 + 117 Gaps:3 88.37 129 73.68 8e-55 mol:protein length:129 HISTONE H2A-IV
blastp_pdb 1eqz_E 10 126 + 117 Gaps:3 88.37 129 73.68 8e-55 mol:protein length:129 PROTEIN (HISTONE H2A)
blastp_pdb 1eqz_A 10 126 + 117 Gaps:3 88.37 129 73.68 8e-55 mol:protein length:129 PROTEIN (HISTONE H2A)
blastp_uniprot_sprot sp|O65759|H2AX_CICAR 1 141 + 141 Gaps:2 100.00 139 87.77 1e-83 Histone H2AX OS Cicer arietinum GN HIS2A PE 2 SV 1
blastp_uniprot_sprot sp|Q9S9K7|H2AXB_ARATH 1 141 + 141 Gaps:1 100.00 142 85.92 4e-83 Probable histone H2AXb OS Arabidopsis thaliana GN At1g54690 PE 1 SV 1
blastp_uniprot_sprot sp|O04848|H2AXA_ARATH 1 141 + 141 Gaps:1 100.00 142 85.21 6e-83 Probable histone H2AXa OS Arabidopsis thaliana GN At1g08880 PE 1 SV 1
blastp_uniprot_sprot sp|P35063|H2AX_PICAB 1 141 + 141 Gaps:3 100.00 138 84.06 3e-79 Histone H2AX OS Picea abies PE 2 SV 1
blastp_uniprot_sprot sp|Q2QPG9|H2AXB_ORYSJ 22 141 + 120 none 86.96 138 85.83 8e-71 Probable histone H2AXb OS Oryza sativa subsp. japonica GN Os12g0530000 PE 2 SV 1
blastp_uniprot_sprot sp|A2ZL69|H2AXB_ORYSI 22 141 + 120 none 86.96 138 85.83 8e-71 Probable histone H2AXb OS Oryza sativa subsp. indica GN OsI_037312 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LLP5|H2AXA_ORYSJ 15 141 + 127 Gaps:1 91.97 137 84.13 1e-66 Probable histone H2AXa OS Oryza sativa subsp. japonica GN Os03g0721900 PE 3 SV 1
blastp_uniprot_sprot sp|A2XLI0|H2AXA_ORYSI 15 141 + 127 Gaps:1 91.97 137 84.13 1e-66 Probable histone H2AXa OS Oryza sativa subsp. indica GN OsI_012923 PE 3 SV 1
blastp_uniprot_sprot sp|O81826|H2A3_ARATH 12 131 + 120 Gaps:4 94.66 131 79.03 7e-64 Probable histone H2A.3 OS Arabidopsis thaliana GN At4g27230 PE 1 SV 1
blastp_uniprot_sprot sp|Q43312|H2A7_WHEAT 12 131 + 120 Gaps:4 92.54 134 78.23 2e-63 Protein H2A.7 OS Triticum aestivum GN H2A-4 PE 2 SV 3

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 131 130 PTHR23430:SF15 none none none
SMART 9 129 121 SM00414 none Histone 2A IPR002119
ProSitePatterns 28 34 7 PS00046 none Histone H2A signature. IPR002119
PRINTS 78 92 15 PR00620 none Histone H2A signature IPR002119
PRINTS 106 124 19 PR00620 none Histone H2A signature IPR002119
PRINTS 20 42 23 PR00620 none Histone H2A signature IPR002119
PRINTS 49 64 16 PR00620 none Histone H2A signature IPR002119
PRINTS 64 77 14 PR00620 none Histone H2A signature IPR002119
PANTHER 2 131 130 PTHR23430 none none none
SUPERFAMILY 23 126 104 SSF47113 none none IPR009072
Pfam 24 97 74 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
Gene3D 13 128 116 G3DSA:1.10.20.10 none none IPR009072

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting