Protein : Qrob_P0290980.2 Q. robur
Protein Identifier  ? Qrob_P0290980.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR23430//PTHR23430:SF15 - HISTONE H2A // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 141  
Kegg Orthology  K11251
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_026503 1 140 + 140 none 100.00 140 97.86 2e-92 Histone superfamily protein
blastp_kegg lcl|tcc:TCM_004504 1 140 + 140 Gaps:1 100.00 139 99.28 3e-91 Gamma histone variant H2AX
blastp_kegg lcl|pvu:PHAVU_006G095800g 1 140 + 140 none 100.00 140 95.71 1e-90 hypothetical protein
blastp_kegg lcl|gmx:100305465 1 140 + 140 none 100.00 140 95.71 1e-90 uncharacterized LOC100305465
blastp_kegg lcl|cic:CICLE_v10002804mg 1 140 + 140 none 100.00 140 95.71 2e-90 hypothetical protein
blastp_kegg lcl|cit:102620423 1 140 + 140 none 100.00 140 95.71 2e-90 histone H2AX-like
blastp_kegg lcl|rcu:RCOM_1429760 1 140 + 140 none 100.00 140 95.00 2e-89 histone h2a putative
blastp_kegg lcl|cmo:103492212 1 140 + 140 none 100.00 140 94.29 3e-89 histone H2AX
blastp_kegg lcl|csv:101223546 1 140 + 140 none 100.00 140 94.29 3e-89 probable histone H2AXb-like
blastp_kegg lcl|csv:101214454 1 140 + 140 none 100.00 140 94.29 3e-89 probable histone H2AXb-like
blastp_pdb 1id3_G 22 140 + 119 Gaps:4 87.79 131 76.52 3e-58 mol:protein length:131 HISTONE H2A.1
blastp_pdb 1id3_C 22 140 + 119 Gaps:4 87.79 131 76.52 3e-58 mol:protein length:131 HISTONE H2A.1
blastp_pdb 3c1c_G 7 125 + 119 none 92.25 129 73.11 6e-57 mol:protein length:129 Histone H2A type 1
blastp_pdb 3c1c_C 7 125 + 119 none 92.25 129 73.11 6e-57 mol:protein length:129 Histone H2A type 1
blastp_pdb 3c1b_G 7 125 + 119 none 92.25 129 73.11 6e-57 mol:protein length:129 Histone H2A type 1
blastp_pdb 3c1b_C 7 125 + 119 none 92.25 129 73.11 6e-57 mol:protein length:129 Histone H2A type 1
blastp_pdb 1p3p_G 7 130 + 124 none 96.12 129 70.97 6e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3p_C 7 130 + 124 none 96.12 129 70.97 6e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3o_G 7 130 + 124 none 96.12 129 70.97 6e-57 mol:protein length:129 Histone H2A
blastp_pdb 1p3o_C 7 130 + 124 none 96.12 129 70.97 6e-57 mol:protein length:129 Histone H2A
blastp_uniprot_sprot sp|O65759|H2AX_CICAR 1 140 + 140 Gaps:1 100.00 139 94.24 3e-88 Histone H2AX OS Cicer arietinum GN HIS2A PE 2 SV 1
blastp_uniprot_sprot sp|O04848|H2AXA_ARATH 3 140 + 138 Gaps:3 99.30 142 90.07 2e-85 Probable histone H2AXa OS Arabidopsis thaliana GN At1g08880 PE 1 SV 1
blastp_uniprot_sprot sp|Q9S9K7|H2AXB_ARATH 7 140 + 134 none 94.37 142 92.54 3e-85 Probable histone H2AXb OS Arabidopsis thaliana GN At1g54690 PE 1 SV 1
blastp_uniprot_sprot sp|P35063|H2AX_PICAB 1 140 + 140 Gaps:2 100.00 138 93.48 1e-84 Histone H2AX OS Picea abies PE 2 SV 1
blastp_uniprot_sprot sp|Q2QPG9|H2AXB_ORYSJ 21 140 + 120 none 86.96 138 92.50 4e-73 Probable histone H2AXb OS Oryza sativa subsp. japonica GN Os12g0530000 PE 2 SV 1
blastp_uniprot_sprot sp|A2ZL69|H2AXB_ORYSI 21 140 + 120 none 86.96 138 92.50 4e-73 Probable histone H2AXb OS Oryza sativa subsp. indica GN OsI_037312 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LLP5|H2AXA_ORYSJ 14 140 + 127 Gaps:1 91.97 137 91.27 7e-70 Probable histone H2AXa OS Oryza sativa subsp. japonica GN Os03g0721900 PE 3 SV 1
blastp_uniprot_sprot sp|A2XLI0|H2AXA_ORYSI 14 140 + 127 Gaps:1 91.97 137 91.27 7e-70 Probable histone H2AXa OS Oryza sativa subsp. indica GN OsI_012923 PE 3 SV 1
blastp_uniprot_sprot sp|O81826|H2A3_ARATH 11 130 + 120 Gaps:4 94.66 131 85.48 4e-66 Probable histone H2A.3 OS Arabidopsis thaliana GN At4g27230 PE 1 SV 1
blastp_uniprot_sprot sp|P50567|H2A_CHLRE 11 132 + 122 Gaps:2 96.12 129 83.06 1e-65 Histone H2A OS Chlamydomonas reinhardtii GN H2A-II PE 1 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 130 129 PTHR23430:SF15 none none none
PRINTS 105 123 19 PR00620 none Histone H2A signature IPR002119
PRINTS 63 76 14 PR00620 none Histone H2A signature IPR002119
PRINTS 48 63 16 PR00620 none Histone H2A signature IPR002119
PRINTS 77 91 15 PR00620 none Histone H2A signature IPR002119
PRINTS 19 41 23 PR00620 none Histone H2A signature IPR002119
Pfam 23 96 74 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
SUPERFAMILY 22 125 104 SSF47113 none none IPR009072
ProSitePatterns 27 33 7 PS00046 none Histone H2A signature. IPR002119
SMART 8 128 121 SM00414 none Histone 2A IPR002119
PANTHER 2 130 129 PTHR23430 none none none
Gene3D 12 126 115 G3DSA:1.10.20.10 none none IPR009072

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting