Protein : Qrob_P0290830.2 Q. robur
Protein Identifier  ? Qrob_P0290830.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0263//KOG0266//KOG0271//KOG0272//KOG0274//KOG0282//KOG0284//KOG0285//KOG0310//KOG0319 - Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]. // WD40 repeat-containing protein [General function prediction only]. // Notchless-like WD40 repeat-containing protein [Function unknown]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // Cdc4 and related F-box and WD-40 proteins [General function prediction only]. // mRNA splicing factor [Function unknown]. // Polyadenylation factor I complex subunit PFS2 [RNA processing and modification]. // Pleiotropic regulator 1 [RNA processing and modification]. // Conserved WD40 repeat-containing protein [Function unknown]. // WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 492  
Kegg Orthology  K14549
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0005730 nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101229785 1 490 + 490 Gaps:44 100.00 528 69.32 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|csv:101220388 1 490 + 490 Gaps:44 100.00 528 69.32 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|cic:CICLE_v10019671mg 20 490 + 471 Gaps:35 94.74 532 71.23 0.0 hypothetical protein
blastp_kegg lcl|cit:102621396 20 490 + 471 Gaps:35 94.74 532 71.23 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|pper:PRUPE_ppa003776mg 24 490 + 467 Gaps:58 95.45 550 70.10 0.0 hypothetical protein
blastp_kegg lcl|pmum:103322321 24 490 + 467 Gaps:58 95.45 550 69.52 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|pop:POPTR_0014s13130g 10 490 + 481 Gaps:36 96.44 534 71.26 0.0 POPTRDRAFT_774857 transducin family protein
blastp_kegg lcl|vvi:100264761 1 490 + 490 Gaps:39 99.81 528 68.31 0.0 U3 small nucleolar RNA-associated protein 15 homolog-like
blastp_kegg lcl|cmo:103492718 1 490 + 490 Gaps:44 100.00 528 69.13 0.0 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|tcc:TCM_004505 11 490 + 480 Gaps:42 96.47 539 72.31 0.0 Transducin family protein / WD-40 repeat family protein
blastp_pdb 3mxx_A 45 306 + 262 Gaps:26 78.10 315 26.42 3e-14 mol:protein length:315 WD repeat-containing protein 5
blastp_pdb 2xl3_B 45 306 + 262 Gaps:26 73.65 334 26.02 6e-14 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl3_A 45 306 + 262 Gaps:26 73.65 334 26.02 6e-14 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_B 45 306 + 262 Gaps:26 73.65 334 26.02 6e-14 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_A 45 306 + 262 Gaps:26 73.65 334 26.02 6e-14 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2h9p_A 45 306 + 262 Gaps:26 74.77 329 26.02 6e-14 mol:protein length:329 WD-repeat protein 5
blastp_pdb 2h9l_A 45 306 + 262 Gaps:26 74.77 329 26.02 6e-14 mol:protein length:329 WD-repeat protein 5
blastp_pdb 2g99_B 45 306 + 262 Gaps:26 79.87 308 26.02 7e-14 mol:protein length:308 WD-repeat protein 5
blastp_pdb 2g99_A 45 306 + 262 Gaps:26 79.87 308 26.02 7e-14 mol:protein length:308 WD-repeat protein 5
blastp_pdb 3emh_A 45 306 + 262 Gaps:26 77.36 318 26.02 7e-14 mol:protein length:318 WD repeat-containing protein 5
blastp_uniprot_sprot sp|Q5F3D7|UTP15_CHICK 1 485 + 485 Gaps:66 94.42 520 34.22 1e-82 U3 small nucleolar RNA-associated protein 15 homolog OS Gallus gallus GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XGE2|UTP15_XENTR 10 485 + 476 Gaps:65 93.79 515 33.75 6e-82 U3 small nucleolar RNA-associated protein 15 homolog OS Xenopus tropicalis GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZXZ2|UTP15_XENLA 6 485 + 480 Gaps:61 95.34 515 33.20 2e-79 U3 small nucleolar RNA-associated protein 15 homolog OS Xenopus laevis GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q8TED0|UTP15_HUMAN 25 485 + 461 Gaps:61 91.12 518 34.11 1e-77 U3 small nucleolar RNA-associated protein 15 homolog OS Homo sapiens GN UTP15 PE 1 SV 3
blastp_uniprot_sprot sp|A7MB12|UTP15_BOVIN 25 490 + 466 Gaps:61 91.91 519 33.75 1e-77 U3 small nucleolar RNA-associated protein 15 homolog OS Bos taurus GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|A2RRU3|UTP15_RAT 25 491 + 467 Gaps:61 90.53 528 34.10 1e-77 U3 small nucleolar RNA-associated protein 15 homolog OS Rattus norvegicus GN Utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q8C7V3|UTP15_MOUSE 25 491 + 467 Gaps:61 90.53 528 34.10 2e-77 U3 small nucleolar RNA-associated protein 15 homolog OS Mus musculus GN Utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q5REE0|UTP15_PONAB 25 485 + 461 Gaps:61 91.12 518 33.90 7e-75 U3 small nucleolar RNA-associated protein 15 homolog OS Pongo abelii GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZW33|UTP15_DANRE 6 485 + 480 Gaps:70 94.78 517 34.08 2e-71 U3 small nucleolar RNA-associated protein 15 homolog OS Danio rerio GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|O94365|UTP15_SCHPO 1 484 + 484 Gaps:60 99.60 494 31.50 7e-68 U3 small nucleolar RNA-associated protein 15 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN utp15 PE 3 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 35 305 271 SSF50978 none none IPR017986
Pfam 179 208 30 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 138 166 29 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 39 269 231 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
SMART 32 71 40 SM00320 none WD40 repeats IPR001680
SMART 116 166 51 SM00320 none WD40 repeats IPR001680
SMART 212 260 49 SM00320 none WD40 repeats IPR001680
SMART 171 208 38 SM00320 none WD40 repeats IPR001680
SMART 74 113 40 SM00320 none WD40 repeats IPR001680
PANTHER 24 490 467 PTHR19924 none none none
ProSiteProfiles 154 168 15 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSitePatterns 153 167 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
Pfam 338 483 146 PF09384 none UTP15 C terminal IPR018983
Gene3D 37 306 270 G3DSA:2.130.10.10 none none IPR015943

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting