Protein : Qrob_P0290810.2 Q. robur
Protein Identifier  ? Qrob_P0290810.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) K14549 - U3 small nucleolar RNA-associated protein 15 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 278  
Kegg Orthology  K14549
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0005730 nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10019671mg 1 276 + 276 Gaps:2 51.88 532 78.26 6e-153 hypothetical protein
blastp_kegg lcl|cit:102621396 1 276 + 276 Gaps:2 51.88 532 78.26 6e-153 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|tcc:TCM_004505 1 276 + 276 Gaps:6 51.58 539 79.14 2e-149 Transducin family protein / WD-40 repeat family protein
blastp_kegg lcl|vvi:100264761 1 276 + 276 Gaps:3 52.46 528 75.45 3e-148 U3 small nucleolar RNA-associated protein 15 homolog-like
blastp_kegg lcl|pper:PRUPE_ppa003776mg 1 276 + 276 Gaps:24 54.55 550 71.00 3e-143 hypothetical protein
blastp_kegg lcl|pmum:103322321 1 276 + 276 Gaps:24 54.55 550 70.67 8e-143 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|csv:101229785 1 276 + 276 Gaps:4 52.65 528 73.38 1e-142 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|csv:101220388 1 276 + 276 Gaps:4 52.65 528 73.38 1e-142 U3 small nucleolar RNA-associated protein 15 homolog
blastp_kegg lcl|pop:POPTR_0014s13130g 1 276 + 276 Gaps:2 52.06 534 78.06 1e-142 POPTRDRAFT_774857 transducin family protein
blastp_kegg lcl|cam:101507389 1 276 + 276 Gaps:5 53.52 525 69.40 5e-136 U3 small nucleolar RNA-associated protein 15 homolog
blastp_uniprot_sprot sp|Q5XGE2|UTP15_XENTR 1 271 + 271 Gaps:26 49.13 515 32.41 4e-31 U3 small nucleolar RNA-associated protein 15 homolog OS Xenopus tropicalis GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q5F3D7|UTP15_CHICK 1 271 + 271 Gaps:27 48.46 520 30.95 4e-29 U3 small nucleolar RNA-associated protein 15 homolog OS Gallus gallus GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZXZ2|UTP15_XENLA 1 271 + 271 Gaps:26 49.13 515 32.41 8e-29 U3 small nucleolar RNA-associated protein 15 homolog OS Xenopus laevis GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|O94365|UTP15_SCHPO 5 270 + 266 Gaps:19 50.00 494 30.77 8e-25 U3 small nucleolar RNA-associated protein 15 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN utp15 PE 3 SV 1
blastp_uniprot_sprot sp|Q7ZW33|UTP15_DANRE 4 271 + 268 Gaps:27 48.16 517 32.93 5e-24 U3 small nucleolar RNA-associated protein 15 homolog OS Danio rerio GN utp15 PE 2 SV 1
blastp_uniprot_sprot sp|Q8C7V3|UTP15_MOUSE 1 277 + 277 Gaps:27 48.86 528 31.40 1e-23 U3 small nucleolar RNA-associated protein 15 homolog OS Mus musculus GN Utp15 PE 2 SV 1
blastp_uniprot_sprot sp|A7MB12|UTP15_BOVIN 1 276 + 276 Gaps:27 49.52 519 30.74 4e-23 U3 small nucleolar RNA-associated protein 15 homolog OS Bos taurus GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|Q8TED0|UTP15_HUMAN 1 271 + 271 Gaps:27 48.65 518 31.35 7e-23 U3 small nucleolar RNA-associated protein 15 homolog OS Homo sapiens GN UTP15 PE 1 SV 3
blastp_uniprot_sprot sp|Q5REE0|UTP15_PONAB 1 271 + 271 Gaps:27 48.65 518 31.35 9e-23 U3 small nucleolar RNA-associated protein 15 homolog OS Pongo abelii GN UTP15 PE 2 SV 1
blastp_uniprot_sprot sp|A2RRU3|UTP15_RAT 1 277 + 277 Gaps:27 48.86 528 31.01 1e-22 U3 small nucleolar RNA-associated protein 15 homolog OS Rattus norvegicus GN Utp15 PE 2 SV 1
rpsblast_cdd gnl|CDD|192278 124 270 + 147 none 100.00 147 39.46 1e-39 pfam09384 UTP15_C UTP15 C terminal. U3 snoRNA is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA. It is a component of the ribosomal small subunit (SSU) processome. UTP15 is needed for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). This entry represents the C terminal of UTP15 and is found adjacent to WD40 repeats (pfam00400).
rpsblast_kog gnl|CDD|35531 1 276 + 276 Gaps:21 52.77 487 40.47 4e-63 KOG0310 KOG0310 KOG0310 Conserved WD40 repeat-containing protein [Function unknown].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 4 90 87 G3DSA:2.130.10.10 none none IPR015943
SUPERFAMILY 2 91 90 SSF50978 none none IPR017986
Pfam 124 269 146 PF09384 none UTP15 C terminal IPR018983
PANTHER 1 276 276 PTHR19924 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting