Protein : Qrob_P0289240.2 Q. robur
Protein Identifier  ? Qrob_P0289240.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PTHR24223:SF181 - ABC TRANSPORTER C FAMILY MEMBER 3-RELATED (PTHR24223:SF181) Code Enzyme  EC:3.6.3.44
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1415  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103342679 17 1407 + 1391 Gaps:116 99.80 1504 68.02 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|mdm:103448328 15 1407 + 1393 Gaps:126 100.00 1515 67.19 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|pxb:103945685 15 1407 + 1393 Gaps:123 100.00 1514 66.97 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|pper:PRUPE_ppa014637mg 41 1407 + 1367 Gaps:113 99.93 1477 68.63 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa022260mg 40 1407 + 1368 Gaps:113 100.00 1477 68.52 0.0 hypothetical protein
blastp_kegg lcl|cit:102618233 36 1407 + 1372 Gaps:122 100.00 1492 67.63 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|mdm:103448329 36 1407 + 1372 Gaps:132 100.00 1480 67.30 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|mdm:103403912 15 1407 + 1393 Gaps:125 100.00 1514 65.92 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|fve:101311724 26 1407 + 1382 Gaps:123 99.67 1506 67.02 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|pxb:103948026 15 1407 + 1393 Gaps:126 100.00 1515 66.67 0.0 ABC transporter C family member 3-like
blastp_pdb 2cbz_A 629 1399 + 771 Gaps:20 96.62 237 55.02 6e-65 mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1
blastp_pdb 2pze_B 629 1372 + 744 Gaps:17 96.51 229 48.87 2e-48 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pze_A 629 1372 + 744 Gaps:17 96.51 229 48.87 2e-48 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_B 629 1372 + 744 Gaps:17 91.70 241 48.87 2e-48 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_A 629 1372 + 744 Gaps:17 91.70 241 48.87 2e-48 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r10_B 646 1372 + 727 Gaps:14 70.98 286 49.75 5e-47 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r10_A 646 1372 + 727 Gaps:14 70.98 286 49.75 5e-47 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_D 646 1372 + 727 Gaps:14 70.98 286 49.75 5e-47 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_C 646 1372 + 727 Gaps:14 70.98 286 49.75 5e-47 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1r0z_B 646 1372 + 727 Gaps:14 70.98 286 49.75 5e-47 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_uniprot_sprot sp|Q9LK64|AB3C_ARATH 15 1407 + 1393 Gaps:129 100.00 1514 60.96 0.0 ABC transporter C family member 3 OS Arabidopsis thaliana GN ABCC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LK62|AB7C_ARATH 33 1410 + 1378 Gaps:111 99.46 1493 58.05 0.0 ABC transporter C family member 7 OS Arabidopsis thaliana GN ABCC7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZZ4|AB6C_ARATH 38 1408 + 1371 Gaps:113 99.73 1466 58.82 0.0 ABC transporter C family member 6 OS Arabidopsis thaliana GN ABCC6 PE 2 SV 3
blastp_uniprot_sprot sp|Q7GB25|AB5C_ARATH 134 1403 + 1270 Gaps:133 92.01 1514 47.95 0.0 ABC transporter C family member 5 OS Arabidopsis thaliana GN ABCC5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M1C7|AB9C_ARATH 158 1413 + 1256 Gaps:130 89.71 1506 48.93 0.0 ABC transporter C family member 9 OS Arabidopsis thaliana GN ABCC9 PE 2 SV 2
blastp_uniprot_sprot sp|Q7FB56|AB15C_ARATH 418 1403 + 986 Gaps:103 99.05 1053 52.73 0.0 Putative ABC transporter C family member 15 OS Arabidopsis thaliana GN ABCC15 PE 5 SV 2
blastp_uniprot_sprot sp|Q9LYS2|AB10C_ARATH 210 1405 + 1196 Gaps:104 88.23 1453 40.56 0.0 ABC transporter C family member 10 OS Arabidopsis thaliana GN ABCC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGU1|AB8C_ARATH 222 1411 + 1190 Gaps:124 87.02 1464 42.39 0.0 ABC transporter C family member 8 OS Arabidopsis thaliana GN ABCC8 PE 2 SV 3
blastp_uniprot_sprot sp|Q9LZJ5|AB14C_ARATH 94 1402 + 1309 Gaps:158 93.50 1539 38.01 0.0 ABC transporter C family member 14 OS Arabidopsis thaliana GN ABCC14 PE 1 SV 1
blastp_uniprot_sprot sp|Q7DM58|AB4C_ARATH 233 1402 + 1170 Gaps:120 83.51 1516 41.07 0.0 ABC transporter C family member 4 OS Arabidopsis thaliana GN ABCC4 PE 1 SV 2

47 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1023 1046 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 308 610 303 SSF90123 none none IPR011527
Pfam 649 783 135 PF00005 none ABC transporter IPR003439
Pfam 1179 1327 149 PF00005 none ABC transporter IPR003439
PANTHER 24 1402 1379 PTHR24223:SF181 none none none
Phobius 590 909 320 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 127 147 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 994 1022 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 910 933 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 215 427 213 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 925 1067 143 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
ProSiteProfiles 1164 1396 233 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
ProSiteProfiles 631 854 224 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 116 126 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 628 853 226 SSF52540 none none IPR027417
Phobius 1047 1051 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 316 582 267 PF00664 none ABC transporter transmembrane region IPR011527
ProSiteProfiles 316 597 282 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Phobius 148 158 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 192 214 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 450 454 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 46 46 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 964 993 30 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 475 532 58 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 565 569 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 934 963 30 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 632 857 226 G3DSA:3.40.50.300 none none IPR027417
Phobius 181 191 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 570 589 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 455 474 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

14 Localization

Analysis Start End Length
TMHMM 542 564 22
TMHMM 428 450 22
TMHMM 1052 1074 22
TMHMM 455 477 22
TMHMM 192 214 22
TMHMM 128 147 19
TMHMM 96 118 22
TMHMM 574 596 22
TMHMM 916 938 22
TMHMM 1026 1048 22
TMHMM 1095 1117 22
TMHMM 47 69 22
TMHMM 958 980 22
TMHMM 160 182 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 59   Mitochondrion 3 0.175 0.627 NON-PLANT 59