Protein : Qrob_P0289170.2 Q. robur
Protein Identifier  ? Qrob_P0289170.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PTHR24223:SF181 - ABC TRANSPORTER C FAMILY MEMBER 3-RELATED (PTHR24223:SF181) Code Enzyme  EC:3.6.3.44
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1419  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103448328 1 1416 + 1416 Gaps:24 99.21 1515 74.32 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|pxb:103945685 1 1416 + 1416 Gaps:23 99.21 1514 73.83 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|pmum:103342679 1 1381 + 1381 Gaps:40 98.67 1504 73.85 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|pper:PRUPE_ppa014637mg 18 1416 + 1399 Gaps:23 99.86 1477 75.12 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa022260mg 17 1416 + 1400 Gaps:23 99.93 1477 75.27 0.0 hypothetical protein
blastp_kegg lcl|pxb:103948026 1 1416 + 1416 Gaps:24 99.21 1515 73.59 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|mdm:103448329 13 1416 + 1404 Gaps:32 99.93 1480 73.83 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|mdm:103403912 1 1416 + 1416 Gaps:25 99.21 1514 73.17 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|fve:101311724 7 1416 + 1410 Gaps:23 99.34 1506 73.73 0.0 ABC transporter C family member 3-like
blastp_kegg lcl|cit:102618233 13 1416 + 1404 Gaps:24 99.93 1492 73.57 0.0 ABC transporter C family member 3-like
blastp_pdb 2cbz_A 622 845 + 224 Gaps:3 94.94 237 48.44 2e-65 mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1
blastp_pdb 2pze_B 639 841 + 203 none 88.65 229 40.89 6e-47 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pze_A 639 841 + 203 none 88.65 229 40.89 6e-47 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_B 639 841 + 203 none 84.23 241 40.89 8e-47 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_A 639 841 + 203 none 84.23 241 40.89 8e-47 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1xmi_E 642 841 + 200 none 68.73 291 41.00 4e-45 mol:protein length:291 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1xmi_D 642 841 + 200 none 68.73 291 41.00 4e-45 mol:protein length:291 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1xmi_C 642 841 + 200 none 68.73 291 41.00 4e-45 mol:protein length:291 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1xmi_B 642 841 + 200 none 68.73 291 41.00 4e-45 mol:protein length:291 Cystic fibrosis transmembrane conductance reg
blastp_pdb 1xmi_A 642 841 + 200 none 68.73 291 41.00 4e-45 mol:protein length:291 Cystic fibrosis transmembrane conductance reg
blastp_uniprot_sprot sp|Q9LK64|AB3C_ARATH 1 1416 + 1416 Gaps:28 99.14 1514 66.29 0.0 ABC transporter C family member 3 OS Arabidopsis thaliana GN ABCC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LK62|AB7C_ARATH 29 1418 + 1390 Gaps:39 98.06 1493 61.07 0.0 ABC transporter C family member 7 OS Arabidopsis thaliana GN ABCC7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZZ4|AB6C_ARATH 59 1380 + 1322 Gaps:45 95.91 1466 61.17 0.0 ABC transporter C family member 6 OS Arabidopsis thaliana GN ABCC6 PE 2 SV 3
blastp_uniprot_sprot sp|Q7GB25|AB5C_ARATH 112 1380 + 1269 Gaps:78 92.14 1514 50.68 0.0 ABC transporter C family member 5 OS Arabidopsis thaliana GN ABCC5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M1C7|AB9C_ARATH 136 1381 + 1246 Gaps:47 87.92 1506 51.51 0.0 ABC transporter C family member 9 OS Arabidopsis thaliana GN ABCC9 PE 2 SV 2
blastp_uniprot_sprot sp|Q7FB56|AB15C_ARATH 411 1381 + 971 Gaps:66 96.49 1053 55.91 0.0 Putative ABC transporter C family member 15 OS Arabidopsis thaliana GN ABCC15 PE 5 SV 2
blastp_uniprot_sprot sp|Q7DM58|AB4C_ARATH 206 1380 + 1175 Gaps:34 85.16 1516 42.14 0.0 ABC transporter C family member 4 OS Arabidopsis thaliana GN ABCC4 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LZJ5|AB14C_ARATH 70 1380 + 1311 Gaps:86 93.76 1539 39.57 0.0 ABC transporter C family member 14 OS Arabidopsis thaliana GN ABCC14 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LYS2|AB10C_ARATH 189 1380 + 1192 Gaps:54 86.24 1453 43.74 0.0 ABC transporter C family member 10 OS Arabidopsis thaliana GN ABCC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGU1|AB8C_ARATH 233 1381 + 1149 Gaps:38 85.11 1464 42.54 0.0 ABC transporter C family member 8 OS Arabidopsis thaliana GN ABCC8 PE 2 SV 3

53 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 468 534 67 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 535 557 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 621 846 226 SSF52540 none none IPR027417
Phobius 163 173 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 174 192 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 176 176 PTHR24223:SF181 none none none
Phobius 24 47 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 309 330 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 624 847 224 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
ProSitePatterns 749 763 15 PS00211 none ABC transporters family signature. IPR017871
Pfam 310 577 268 PF00664 none ABC transporter transmembrane region IPR011527
Pfam 939 1201 263 PF00664 none ABC transporter transmembrane region IPR011527
Gene3D 303 602 300 G3DSA:1.20.1560.10 none none none
Gene3D 935 1231 297 G3DSA:1.20.1560.10 none none none
PANTHER 198 1412 1215 PTHR24223 none none none
Phobius 971 990 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1212 1418 207 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 96 142 47 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 231 251 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 642 776 135 PF00005 none ABC transporter IPR003439
Pfam 1270 1369 100 PF00005 none ABC transporter IPR003439
Phobius 919 943 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 935 1215 281 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Phobius 944 970 27 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1064 1068 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1157 1179 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 442 447 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 68 95 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1069 1087 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 176 176 PTHR24223 none none none

15 Localization

Analysis Start End Length
TMHMM 1043 1065 22
TMHMM 1069 1091 22
TMHMM 973 995 22
TMHMM 1156 1178 22
TMHMM 1188 1210 22
TMHMM 421 443 22
TMHMM 230 252 22
TMHMM 448 470 22
TMHMM 24 46 22
TMHMM 171 193 22
TMHMM 535 557 22
TMHMM 139 161 22
TMHMM 105 127 22
TMHMM 309 331 22
TMHMM 73 95 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 155   Secretory pathway 5 0.610 0.084 NON-PLANT 155