Protein : Qrob_P0288890.2 Q. robur
Protein Identifier  ? Qrob_P0288890.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR13068:SF13 - MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN (PTHR13068:SF13) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 502  
Kegg Orthology  K15032
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103448334 26 501 + 476 Gaps:27 95.75 494 76.96 0.0 uncharacterized LOC103448334
blastp_kegg lcl|pmum:103342698 26 501 + 476 Gaps:33 95.36 496 75.26 0.0 uncharacterized LOC103342698
blastp_kegg lcl|fve:101293573 15 501 + 487 Gaps:37 99.18 488 73.76 0.0 uncharacterized protein LOC101293573
blastp_kegg lcl|vvi:100260706 7 500 + 494 Gaps:51 99.42 514 70.84 0.0 uncharacterized LOC100260706
blastp_kegg lcl|mdm:103427888 24 500 + 477 Gaps:27 94.61 501 74.26 0.0 uncharacterized LOC103427888
blastp_kegg lcl|mdm:103427287 24 500 + 477 Gaps:27 94.61 501 74.05 0.0 uncharacterized LOC103427287
blastp_kegg lcl|pxb:103938495 49 500 + 452 Gaps:18 91.42 501 75.11 0.0 uncharacterized LOC103938495
blastp_kegg lcl|tcc:TCM_030731 58 499 + 442 Gaps:40 90.74 529 71.88 0.0 Mitochondrial transcription termination factor family protein isoform 1
blastp_kegg lcl|cit:102620715 1 501 + 501 Gaps:61 100.00 506 70.95 0.0 uncharacterized LOC102620715
blastp_kegg lcl|pper:PRUPEppa006059m1g 56 501 + 446 Gaps:58 100.00 388 85.05 0.0 hypothetical protein
blastp_pdb 3m66_A 226 488 + 263 Gaps:29 97.78 270 27.27 1e-10 mol:protein length:270 mTERF domain-containing protein 1 mitochondr
blastp_pdb 3opg_A 226 488 + 263 Gaps:29 88.59 298 27.65 3e-10 mol:protein length:298 mTERF domain-containing protein 1 mitochondr
blastp_uniprot_sprot sp|Q6P6Q6|MTER1_RAT 226 488 + 263 Gaps:29 64.55 409 28.41 3e-11 mTERF domain-containing protein 1 mitochondrial OS Rattus norvegicus GN Mterfd1 PE 2 SV 1
blastp_uniprot_sprot sp|Q96E29|MTER1_HUMAN 226 488 + 263 Gaps:29 63.31 417 27.65 2e-09 mTERF domain-containing protein 1 mitochondrial OS Homo sapiens GN MTERFD1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8R3J4|MTER1_MOUSE 228 488 + 261 Gaps:29 63.59 412 26.72 1e-07 mTERF domain-containing protein 1 mitochondrial OS Mus musculus GN Mterfd1 PE 2 SV 1
rpsblast_cdd gnl|CDD|178738 193 449 + 257 Gaps:23 71.25 487 40.06 4e-31 PLN03196 PLN03196 MOC1-like protein Provisional.
rpsblast_cdd gnl|CDD|202273 191 471 + 281 Gaps:47 99.13 345 29.82 4e-22 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_kog gnl|CDD|36481 164 451 + 288 Gaps:19 65.62 413 31.37 3e-31 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 52 500 449 PTHR13068:SF13 none none none
PANTHER 52 500 449 PTHR13068 none none none
Coils 162 183 22 Coil none none none
SMART 421 452 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 242 273 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 352 383 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 388 420 33 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 278 310 33 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 315 347 33 SM00733 none Mitochondrial termination factor repeats IPR003690
Pfam 196 368 173 PF02536 none mTERF IPR003690
Pfam 370 470 101 PF02536 none mTERF IPR003690

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Secretory pathway 5 0.380 0.327 NON-PLANT 19