Protein : Qrob_P0288430.2 Q. robur
Protein Identifier  ? Qrob_P0288430.2 Organism . Name  Quercus robur
Score  3.1 Score Type  egn
Protein Description  (M=2) KOG0701//KOG1817 - dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]. // Ribonuclease [RNA processing and modification]. Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 547  
Kegg Orthology  K11592
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341363 11 539 + 529 Gaps:2 32.01 1659 75.89 0.0 dicer-like protein 4
blastp_kegg lcl|pper:PRUPE_ppa000144mg 11 539 + 529 Gaps:2 32.40 1639 75.14 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_037118 8 540 + 533 Gaps:3 31.48 1690 74.81 0.0 Dicer-like protein isoform 2
blastp_kegg lcl|vvi:100243116 8 536 + 529 Gaps:5 32.43 1622 74.71 0.0 dicer-like protein 4
blastp_kegg lcl|fve:101304916 8 539 + 532 Gaps:3 32.82 1630 72.34 0.0 dicer-like protein 4-like
blastp_kegg lcl|pxb:103949123 12 540 + 529 Gaps:2 32.70 1624 73.63 0.0 dicer-like protein 4
blastp_kegg lcl|rcu:RCOM_0701500 10 539 + 530 Gaps:2 32.58 1633 70.11 0.0 Ribonuclease III putative (EC:3.1.26.3)
blastp_kegg lcl|pop:POPTR_0006s20310g 8 535 + 528 Gaps:3 32.30 1638 69.94 0.0 POPTRDRAFT_802171 hypothetical protein
blastp_kegg lcl|cit:102621372 8 539 + 532 Gaps:4 32.32 1652 70.60 0.0 dicer-like protein 4-like
blastp_kegg lcl|gmx:100797277 8 536 + 529 Gaps:4 32.56 1637 70.73 0.0 dicer-like protein 4-like
blastp_pdb 3c4t_A 269 444 + 176 Gaps:16 72.45 265 39.06 5e-32 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 269 444 + 176 Gaps:16 72.45 265 39.06 5e-32 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 2eb1_C 269 432 + 164 Gaps:15 89.50 200 38.55 4e-29 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 269 432 + 164 Gaps:15 89.50 200 38.55 4e-29 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 269 432 + 164 Gaps:15 89.50 200 38.55 4e-29 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 3n3w_B 257 502 + 246 Gaps:37 92.34 248 30.57 2e-16 mol:protein length:248 Ribonuclease III
blastp_pdb 3n3w_A 257 502 + 246 Gaps:37 92.34 248 30.57 2e-16 mol:protein length:248 Ribonuclease III
blastp_pdb 3o2r_D 257 411 + 155 Gaps:25 78.82 170 38.81 2e-16 mol:protein length:170 Ribonuclease III
blastp_pdb 3o2r_B 257 411 + 155 Gaps:25 78.82 170 38.81 2e-16 mol:protein length:170 Ribonuclease III
blastp_pdb 3o2r_C 257 411 + 155 Gaps:25 78.82 170 38.81 2e-16 mol:protein length:170 Ribonuclease III
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 9 536 + 528 Gaps:2 31.14 1702 61.51 0.0 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2
blastp_uniprot_sprot sp|A7LFZ6|DCL4_ORYSJ 2 535 + 534 Gaps:3 32.29 1657 54.77 0.0 Endoribonuclease Dicer homolog 4 OS Oryza sativa subsp. japonica GN DCL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 20 511 + 492 Gaps:31 31.08 1580 38.09 2e-92 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 14 511 + 498 Gaps:14 30.54 1637 39.00 7e-91 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 5 504 + 500 Gaps:34 30.04 1651 38.31 1e-88 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 7 501 + 495 Gaps:34 33.93 1388 38.43 5e-87 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 16 488 + 473 Gaps:29 25.04 1909 38.28 5e-83 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 16 501 + 486 Gaps:30 26.13 1883 38.21 4e-82 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 6 506 + 501 Gaps:38 34.40 1410 35.67 1e-75 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 7 506 + 500 Gaps:44 34.86 1377 36.88 1e-74 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 80 225 146 PS50142 none Ribonuclease III family domain profile. IPR000999
ProSiteProfiles 266 410 145 PS50142 none Ribonuclease III family domain profile. IPR000999
PANTHER 1 533 533 PTHR14950 none none none
Gene3D 193 240 48 G3DSA:1.10.1520.10 none none IPR000999
Gene3D 78 151 74 G3DSA:1.10.1520.10 none none IPR000999
Gene3D 437 501 65 G3DSA:3.30.160.20 none none IPR014720
ProSiteProfiles 436 502 67 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
Pfam 301 410 110 PF00636 none Ribonuclease III domain IPR000999
Pfam 94 225 132 PF00636 none Ribonuclease III domain IPR000999
SUPERFAMILY 392 501 110 SSF54768 none none none
Gene3D 265 428 164 G3DSA:1.10.1520.10 none none IPR000999
PANTHER 1 533 533 PTHR14950:SF15 none none none
ProSitePatterns 301 309 9 PS00517 none Ribonuclease III family signature. IPR000999
SUPERFAMILY 199 239 41 SSF69065 none none IPR000999
SUPERFAMILY 76 151 76 SSF69065 none none IPR000999
SMART 281 433 153 SM00535 none Ribonuclease III family IPR000999
SMART 76 245 170 SM00535 none Ribonuclease III family IPR000999
SUPERFAMILY 264 428 165 SSF69065 none none IPR000999

0 Localization

0 Qtllist

0 Targeting