Protein : Qrob_P0288410.2 Q. robur
Protein Identifier  ? Qrob_P0288410.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0330//KOG0331//KOG0333//KOG0338//KOG0340//KOG0343//KOG0350//KOG0354//KOG0701//KOG1817 - ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // U5 snRNP-like RNA helicase subunit [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // RNA Helicase [RNA processing and modification]. // DEAD-box ATP-dependent RNA helicase [RNA processing and modification]. // DEAD-box like helicase [General function prediction only]. // dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]. // Ribonuclease [RNA processing and modification]. Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 988  
Kegg Orthology  K11592
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341363 10 970 + 961 Gaps:18 57.20 1659 73.45 0.0 dicer-like protein 4
blastp_kegg lcl|pper:PRUPE_ppa000144mg 10 970 + 961 Gaps:18 57.90 1639 73.02 0.0 hypothetical protein
blastp_kegg lcl|vvi:100243116 10 971 + 962 Gaps:21 58.01 1622 73.11 0.0 dicer-like protein 4
blastp_kegg lcl|tcc:TCM_037118 23 971 + 949 Gaps:51 57.63 1690 71.05 0.0 Dicer-like protein isoform 2
blastp_kegg lcl|pxb:103949123 10 971 + 962 Gaps:23 58.19 1624 71.22 0.0 dicer-like protein 4
blastp_kegg lcl|cit:102621372 23 971 + 949 Gaps:17 56.66 1652 71.05 0.0 dicer-like protein 4-like
blastp_kegg lcl|cic:CICLE_v10007241mg 23 971 + 949 Gaps:17 59.85 1564 71.05 0.0 hypothetical protein
blastp_kegg lcl|gmx:100818702 23 985 + 963 Gaps:15 58.56 1636 67.75 0.0 dicer-like protein 4-like
blastp_kegg lcl|rcu:RCOM_0701500 23 985 + 963 Gaps:22 58.36 1633 70.09 0.0 Ribonuclease III putative (EC:3.1.26.3)
blastp_kegg lcl|gmx:100797277 23 985 + 963 Gaps:15 58.52 1637 67.85 0.0 dicer-like protein 4-like
blastp_pdb 2kou_A 199 295 + 97 Gaps:4 95.10 102 54.64 4e-25 mol:protein length:102 Dicer-like protein 4
blastp_pdb 2eb1_C 847 952 + 106 Gaps:1 53.50 200 49.53 9e-22 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 847 952 + 106 Gaps:1 53.50 200 49.53 9e-22 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 847 952 + 106 Gaps:1 53.50 200 49.53 9e-22 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 3c4t_A 847 952 + 106 Gaps:1 40.38 265 49.53 2e-21 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 847 952 + 106 Gaps:1 40.38 265 49.53 2e-21 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3o2r_D 835 937 + 103 Gaps:2 59.41 170 36.63 2e-11 mol:protein length:170 Ribonuclease III
blastp_pdb 3o2r_B 835 937 + 103 Gaps:2 59.41 170 36.63 2e-11 mol:protein length:170 Ribonuclease III
blastp_pdb 3o2r_C 835 937 + 103 Gaps:2 59.41 170 36.63 2e-11 mol:protein length:170 Ribonuclease III
blastp_pdb 3o2r_A 835 937 + 103 Gaps:2 59.41 170 36.63 2e-11 mol:protein length:170 Ribonuclease III
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 32 985 + 954 Gaps:19 55.99 1702 60.55 0.0 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2
blastp_uniprot_sprot sp|A7LFZ6|DCL4_ORYSJ 33 971 + 939 Gaps:21 56.00 1657 53.88 0.0 Endoribonuclease Dicer homolog 4 OS Oryza sativa subsp. japonica GN DCL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 38 951 + 914 Gaps:55 56.51 1651 34.94 2e-150 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 39 950 + 912 Gaps:64 57.18 1637 33.12 6e-136 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 29 946 + 918 Gaps:75 62.90 1388 35.97 1e-135 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 29 986 + 958 Gaps:84 65.25 1410 32.83 3e-114 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 29 986 + 958 Gaps:112 64.49 1377 32.88 7e-101 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 32 982 + 951 Gaps:72 52.91 1580 31.22 6e-84 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 38 985 + 948 Gaps:99 51.23 1909 32.82 1e-70 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 38 954 + 917 Gaps:88 47.00 1883 35.14 1e-65 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 204 294 91 PS51327 none Dicer double-stranded RNA-binding fold domain profile. IPR005034
PANTHER 31 971 941 PTHR14950 none none none
Pfam 879 942 64 PF00636 none Ribonuclease III domain IPR000999
Pfam 672 803 132 PF00636 none Ribonuclease III domain IPR000999
SMART 475 633 159 SM00949 none none IPR003100
ProSitePatterns 879 887 9 PS00517 none Ribonuclease III family signature. IPR000999
SUPERFAMILY 777 817 41 SSF69065 none none IPR000999
SUPERFAMILY 654 729 76 SSF69065 none none IPR000999
ProSiteProfiles 844 955 112 PS50142 none Ribonuclease III family domain profile. IPR000999
PANTHER 31 971 941 PTHR14950:SF15 none none none
SUPERFAMILY 842 947 106 SSF69065 none none IPR000999
Pfam 204 285 82 PF03368 none Dicer dimerisation domain IPR005034
Gene3D 34 164 131 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 25 177 153 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
SMART 859 962 104 SM00535 none Ribonuclease III family IPR000999
SMART 654 823 170 SM00535 none Ribonuclease III family IPR000999
ProSiteProfiles 634 803 170 PS50142 none Ribonuclease III family domain profile. IPR000999
SMART 50 140 91 SM00490 none helicase superfamily c-terminal domain IPR001650
Gene3D 771 818 48 G3DSA:1.10.1520.10 none none IPR000999
Gene3D 656 729 74 G3DSA:1.10.1520.10 none none IPR000999
SUPERFAMILY 33 156 124 SSF52540 none none IPR027417
Gene3D 843 953 111 G3DSA:1.10.1520.10 none none IPR000999
ProSiteProfiles 554 607 54 PS50821 none PAZ domain profile. IPR003100
Pfam 79 137 59 PF00271 none Helicase conserved C-terminal domain IPR001650

0 Localization

0 Qtllist

0 Targeting