Protein : Qrob_P0288400.2 Q. robur
Protein Identifier  ? Qrob_P0288400.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF00035//PF14709 - Double-stranded RNA binding motif // double strand RNA binding domain from DEAD END PROTEIN 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 309  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341363 6 307 + 302 Gaps:8 18.57 1659 62.01 3e-111 dicer-like protein 4
blastp_kegg lcl|mdm:103415698 6 307 + 302 Gaps:4 55.37 549 59.87 3e-109 dicer-like protein 4
blastp_kegg lcl|mdm:103400332 6 307 + 302 Gaps:4 55.37 549 59.87 3e-109 dicer-like protein 4
blastp_kegg lcl|pper:PRUPE_ppa000144mg 6 307 + 302 Gaps:10 18.67 1639 61.11 3e-106 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10007241mg 6 307 + 302 Gaps:10 19.69 1564 57.47 1e-102 hypothetical protein
blastp_kegg lcl|cit:102621372 6 307 + 302 Gaps:10 18.64 1652 57.14 7e-102 dicer-like protein 4-like
blastp_kegg lcl|pxb:103949123 6 307 + 302 Gaps:4 18.72 1624 59.54 3e-101 dicer-like protein 4
blastp_kegg lcl|gmx:100797277 6 308 + 303 Gaps:11 18.33 1637 58.00 4e-99 dicer-like protein 4-like
blastp_kegg lcl|tcc:TCM_037118 6 307 + 302 Gaps:14 18.70 1690 57.91 8e-97 Dicer-like protein isoform 2
blastp_kegg lcl|cam:101502793 6 307 + 302 Gaps:9 18.24 1628 55.89 2e-96 dicer-like protein 4-like
blastp_pdb 3c4t_A 5 59 + 55 Gaps:2 21.51 265 40.35 5e-07 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 5 59 + 55 Gaps:2 21.51 265 40.35 5e-07 mol:protein length:265 Endoribonuclease Dicer
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 6 307 + 302 Gaps:23 16.75 1702 48.07 4e-70 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2
blastp_uniprot_sprot sp|A7LFZ6|DCL4_ORYSJ 6 308 + 303 Gaps:13 18.83 1657 41.67 3e-66 Endoribonuclease Dicer homolog 4 OS Oryza sativa subsp. japonica GN DCL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 5 302 + 298 Gaps:54 15.88 1637 30.00 7e-16 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|Q9M8N2|RTL1_ARATH 206 303 + 98 Gaps:5 47.98 198 52.63 3e-15 Ribonuclease 3-like protein 1 OS Arabidopsis thaliana GN RTL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 6 126 + 121 none 7.66 1580 33.88 2e-14 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 6 116 + 111 Gaps:3 5.74 1883 38.89 3e-14 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 6 307 + 302 Gaps:61 16.78 1651 29.96 1e-11 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 6 294 + 289 Gaps:4 8.64 1909 41.21 1e-10 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q69KJ0|RTL3_ORYSJ 6 116 + 111 Gaps:4 36.45 299 33.94 5e-10 Ribonuclease 3-like protein 3 OS Oryza sativa subsp. japonica GN Os06g0358800 PE 2 SV 1
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 5 116 + 112 Gaps:4 7.78 1388 35.19 7e-10 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
rpsblast_cdd gnl|CDD|28930 227 301 + 75 Gaps:7 100.00 68 38.24 4e-10 cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR RNA helicases Drosophila staufen protein E. coli RNase III RNases H1 and dsRNA dependent adenosine deaminases..
rpsblast_cdd gnl|CDD|197679 228 298 + 71 Gaps:8 94.03 67 44.44 2e-08 smart00358 DSRM Double-stranded RNA binding motif.
rpsblast_cdd gnl|CDD|30916 6 116 + 111 Gaps:14 48.94 235 29.57 2e-07 COG0571 Rnc dsRNA-specific ribonuclease [Transcription].
rpsblast_kog gnl|CDD|35920 224 302 + 79 Gaps:10 5.54 1606 17.98 1e-07 KOG0701 KOG0701 KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 6 43 38 G3DSA:1.10.1520.10 none none IPR000999
PANTHER 6 148 143 PTHR14950 none none none
Gene3D 228 303 76 G3DSA:3.30.160.20 none none IPR014720
ProSiteProfiles 51 117 67 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
SUPERFAMILY 8 116 109 SSF54768 none none none
Pfam 52 115 64 PF00035 none Double-stranded RNA binding motif IPR014720
PANTHER 6 148 143 PTHR14950:SF15 none none none
ProSiteProfiles 227 303 77 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
Pfam 227 302 76 PF14709 none double strand RNA binding domain from DEAD END PROTEIN 1 none
Gene3D 51 116 66 G3DSA:3.30.160.20 none none IPR014720
SMART 228 302 75 SM00358 none Double-stranded RNA binding motif IPR014720
SMART 52 116 65 SM00358 none Double-stranded RNA binding motif IPR014720
SUPERFAMILY 226 307 82 SSF54768 none none none

0 Localization

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 18   Secretory pathway 3 0.774 0.064 NON-PLANT 18