Protein : Qrob_P0286100.2 Q. robur
Protein Identifier  ? Qrob_P0286100.2 Organism . Name  Quercus robur
Score  92.0 Score Type  egn
Protein Description  (M=2) PF02201//PF03126 - SWIB/MDM2 domain // Plus-3 domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 479  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0016570 histone modification The covalent alteration of one or more amino acid residues within a histone protein.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103319242 2 468 + 467 Gaps:68 78.95 551 55.63 1e-149 uncharacterized protein At5g08430
blastp_kegg lcl|pper:PRUPE_ppa025211mg 2 468 + 467 Gaps:67 88.21 492 55.53 1e-149 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s31330g 1 468 + 468 Gaps:60 89.60 500 52.90 7e-138 SWIB complex BAF60b domain-containing family protein
blastp_kegg lcl|pxb:103933392 17 466 + 450 Gaps:86 53.84 821 49.77 6e-133 uncharacterized protein At5g08430-like
blastp_kegg lcl|mdm:103425377 17 466 + 450 Gaps:88 53.84 821 49.32 6e-130 uncharacterized protein At5g08430-like
blastp_kegg lcl|pmum:103319042 17 466 + 450 Gaps:80 85.11 517 50.23 1e-128 zinc finger CCCH domain-containing protein 19-like
blastp_kegg lcl|pper:PRUPE_ppa021594mg 75 466 + 392 Gaps:41 79.89 527 50.12 4e-126 hypothetical protein
blastp_kegg lcl|pxb:103968119 18 468 + 451 Gaps:74 74.37 558 54.22 6e-126 uncharacterized protein At5g08430-like
blastp_kegg lcl|pxb:103939460 76 468 + 393 Gaps:27 77.50 511 54.04 3e-125 uncharacterized protein At5g08430-like
blastp_kegg lcl|pxb:103945337 76 468 + 393 Gaps:35 77.50 511 55.05 2e-124 uncharacterized protein At5g08430-like
blastp_pdb 1v32_A 238 323 + 86 none 85.15 101 41.86 5e-18 mol:protein length:101 hypothetical protein RAFL09-47-K03
blastp_uniprot_sprot sp|Q9SD34|C3H44_ARATH 20 478 + 459 Gaps:99 33.90 1292 29.91 3e-46 Zinc finger CCCH domain-containing protein 44 OS Arabidopsis thaliana GN At3g51120 PE 2 SV 3
blastp_uniprot_sprot sp|Q9SIV5|C3H19_ARATH 17 468 + 452 Gaps:81 24.99 1773 29.57 6e-46 Zinc finger CCCH domain-containing protein 19 OS Arabidopsis thaliana GN NERD PE 1 SV 3
blastp_uniprot_sprot sp|Q9FT92|Y5843_ARATH 233 468 + 236 Gaps:23 39.96 553 42.99 8e-45 Uncharacterized protein At5g08430 OS Arabidopsis thaliana GN At5g08430 PE 1 SV 2
rpsblast_cdd gnl|CDD|197843 382 468 + 87 Gaps:17 88.07 109 40.62 6e-13 smart00719 Plus3 Short conserved domain in transcriptional regulators. Plus3 domains occur in the Saccharomyces cerevisiae Rtf1p protein which interacts with Spt6p and in parsley CIP which interacts with the bZIP protein CPRF1.
rpsblast_cdd gnl|CDD|190531 384 468 + 85 Gaps:12 90.48 105 26.32 1e-11 pfam03126 Plus-3 Plus-3 domain. This domain is about 90 residues in length and is often found associated with the pfam02213 domain. The function of this domain is uncertain. It is possible that this domain is involved in DNA binding as it has three conserved positively charged residues hence this domain has been named the plus-3 domain. It is found in yeast Rtf1 which may be a transcription elongation factor.
rpsblast_cdd gnl|CDD|145386 252 321 + 70 Gaps:3 88.16 76 37.31 3e-08 pfam02201 SWIB SWIB/MDM2 domain. This family includes the SWIB domain and the MDM2 domain. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2.
rpsblast_kog gnl|CDD|37157 169 391 + 223 Gaps:27 100.00 240 28.75 5e-24 KOG1946 KOG1946 KOG1946 RNA polymerase I transcription factor UAF [Transcription].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 380 478 99 PS51360 none Plus3 domain profile. IPR004343
Pfam 252 321 70 PF02201 none SWIB/MDM2 domain IPR003121
SUPERFAMILY 234 324 91 SSF47592 none none IPR003121
SMART 380 474 95 SM00719 none Short conserved domain in transcriptional regulators. IPR018144
Pfam 384 468 85 PF03126 none Plus-3 domain IPR004343
Gene3D 233 329 97 G3DSA:1.10.245.10 none none IPR003121
SUPERFAMILY 383 468 86 SSF159042 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting