Protein : Qrob_P0282080.2 Q. robur
Protein Identifier  ? Qrob_P0282080.2 Organism . Name  Quercus robur
Protein Description  (M=1) PTHR23430:SF7 - HISTONE H2A.V (PTHR23430:SF7) Alias (in v1)  Qrob_P0814860.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 108  
Kegg Orthology  K11251
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_037984 3 107 + 105 none 77.78 135 93.33 2e-61 Histone H2A protein 9
blastp_kegg lcl|gmx:100499998 3 107 + 105 none 78.36 134 92.38 6e-61 uncharacterized LOC100499998
blastp_kegg lcl|vvi:100249276 3 107 + 105 none 78.36 134 92.38 7e-61 probable histone H2A variant 3-like
blastp_kegg lcl|cit:102610066 3 107 + 105 none 78.36 134 92.38 7e-61 probable histone H2A variant 3-like
blastp_kegg lcl|pvu:PHAVU_009G199100g 3 107 + 105 none 78.36 134 92.38 8e-61 hypothetical protein
blastp_kegg lcl|gmx:100500133 3 107 + 105 none 77.78 135 92.38 9e-61 uncharacterized LOC100500133
blastp_kegg lcl|cic:CICLE_v10010700mg 7 107 + 101 none 52.33 193 95.05 1e-60 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0826270 3 107 + 105 none 78.36 134 92.38 2e-60 histone h2a putative
blastp_kegg lcl|cam:101497893 3 107 + 105 none 80.15 131 92.38 2e-60 probable histone H2A variant 3-like
blastp_kegg lcl|mtr:MTR_1g011750 9 107 + 99 none 97.06 102 94.95 5e-60 Histone H2A
blastp_pdb 1f66_G 7 107 + 101 none 78.91 128 89.11 1e-57 mol:protein length:128 HISTONE H2A.Z
blastp_pdb 1f66_C 7 107 + 101 none 78.91 128 89.11 1e-57 mol:protein length:128 HISTONE H2A.Z
blastp_pdb 2jss_A 7 96 + 90 none 46.88 192 74.44 2e-41 mol:protein length:192 Chimera of Histone H2B.1 and Histone H2A.Z
blastp_pdb 2pyo_G 7 106 + 100 Gaps:2 83.33 120 62.00 1e-33 mol:protein length:120 Histone H2A
blastp_pdb 2pyo_C 7 106 + 100 Gaps:2 83.33 120 62.00 1e-33 mol:protein length:120 Histone H2A
blastp_pdb 2nqb_G 7 106 + 100 Gaps:2 81.30 123 62.00 1e-33 mol:protein length:123 Histone H2A
blastp_pdb 2nqb_C 7 106 + 100 Gaps:2 81.30 123 62.00 1e-33 mol:protein length:123 Histone H2A
blastp_pdb 1id3_G 7 105 + 99 Gaps:2 75.57 131 59.60 2e-33 mol:protein length:131 HISTONE H2A.1
blastp_pdb 1id3_C 7 105 + 99 Gaps:2 75.57 131 59.60 2e-33 mol:protein length:131 HISTONE H2A.1
blastp_pdb 3c9k_E 3 105 + 103 Gaps:2 80.47 128 61.17 3e-33 mol:protein length:128 Histone H2A-IV
blastp_uniprot_sprot sp|Q84MP7|H2AV3_ORYSJ 3 107 + 105 none 76.64 137 89.52 3e-60 Probable histone H2A variant 3 OS Oryza sativa subsp. japonica GN Os03g0743400 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C944|H2AV3_ARATH 3 107 + 105 none 78.36 134 86.67 3e-59 Probable histone H2A variant 3 OS Arabidopsis thaliana GN At1g52740 PE 1 SV 1
blastp_uniprot_sprot sp|Q8H7Y8|H2AV1_ORYSJ 3 107 + 105 none 76.09 138 88.57 4e-59 Probable histone H2A variant 1 OS Oryza sativa subsp. japonica GN Os03g0162200 PE 2 SV 1
blastp_uniprot_sprot sp|Q8S857|H2AV2_ORYSJ 3 107 + 105 none 75.54 139 85.71 8e-58 Probable histone H2A variant 2 OS Oryza sativa subsp. japonica GN Os10g0418000 PE 2 SV 1
blastp_uniprot_sprot sp|O23628|H2AV1_ARATH 7 107 + 101 none 74.26 136 87.13 1e-57 Histone H2A variant 1 OS Arabidopsis thaliana GN H2AV PE 1 SV 1
blastp_uniprot_sprot sp|Q9SII0|H2AV2_ARATH 3 107 + 105 none 77.21 136 84.76 2e-57 Probable histone H2A variant 2 OS Arabidopsis thaliana GN At2g38810 PE 2 SV 1
blastp_uniprot_sprot sp|Q6YNC8|H2AZ_SHEEP 7 107 + 101 none 78.91 128 89.11 5e-57 Histone H2A.Z OS Ovis aries GN H2AFZ PE 2 SV 3
blastp_uniprot_sprot sp|P0C0S7|H2AZ_RAT 7 107 + 101 none 78.91 128 89.11 5e-57 Histone H2A.Z OS Rattus norvegicus GN H2afz PE 1 SV 2
blastp_uniprot_sprot sp|Q5RC42|H2AZ_PONAB 7 107 + 101 none 78.91 128 89.11 5e-57 Histone H2A.Z OS Pongo abelii GN H2AFZ PE 2 SV 3
blastp_uniprot_sprot sp|P22647|H2AZ_ONCMY 7 107 + 101 none 78.91 128 89.11 5e-57 Histone H2A.Z OS Oncorhynchus mykiss GN h2afz PE 1 SV 4

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 7 76 70 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
PANTHER 10 103 94 PTHR23430:SF7 none none none
SMART 1 107 107 SM00414 none Histone 2A IPR002119
PRINTS 28 43 16 PR00620 none Histone H2A signature IPR002119
PRINTS 84 102 19 PR00620 none Histone H2A signature IPR002119
PRINTS 57 71 15 PR00620 none Histone H2A signature IPR002119
PRINTS 43 56 14 PR00620 none Histone H2A signature IPR002119
Gene3D 9 105 97 G3DSA:1.10.20.10 none none IPR009072
SUPERFAMILY 9 84 76 SSF47113 none none IPR009072
PANTHER 10 103 94 PTHR23430 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Mitochondrion 1 0.032 0.929 NON-PLANT 24