Protein : Qrob_P0280720.2 Q. robur
Protein Identifier  ? Qrob_P0280720.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K15505 - DNA repair protein RAD5 [EC:3.6.4.-] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1143  
Kegg Orthology  K15505
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264745 7 1142 + 1136 Gaps:88 97.06 1224 66.67 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like
blastp_kegg lcl|rcu:RCOM_0492090 111 1142 + 1032 Gaps:80 95.91 1051 74.40 0.0 DNA repair helicase rad5 16 putative (EC:2.7.11.1)
blastp_kegg lcl|cmo:103483620 5 1142 + 1138 Gaps:49 96.68 1116 70.99 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3
blastp_kegg lcl|tcc:TCM_020832 40 1142 + 1103 Gaps:71 99.73 1125 67.74 0.0 Helicase protein with RING/U-box domain
blastp_kegg lcl|csv:101231418 5 1142 + 1138 Gaps:92 96.68 1113 72.68 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like
blastp_kegg lcl|csv:101214691 5 1142 + 1138 Gaps:92 96.68 1113 72.68 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like
blastp_kegg lcl|sot:102588387 217 1142 + 926 Gaps:43 84.27 1138 73.31 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like
blastp_kegg lcl|sly:101243672 217 1142 + 926 Gaps:52 85.71 1120 72.60 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like
blastp_kegg lcl|pmum:103324215 264 1141 + 878 Gaps:30 74.70 1186 74.60 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3
blastp_kegg lcl|fve:101313600 210 1141 + 932 Gaps:34 76.69 1231 71.82 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like
blastp_pdb 1z6a_A 468 1125 + 658 Gaps:111 89.40 500 34.23 5e-24 mol:protein length:500 Helicase of the snf2/rad54 family
blastp_pdb 1z63_B 468 1125 + 658 Gaps:111 89.40 500 34.23 5e-24 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z63_A 468 1125 + 658 Gaps:111 89.40 500 34.23 5e-24 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z3i_X 544 1141 + 598 Gaps:54 70.65 644 29.67 3e-22 mol:protein length:644 similar to RAD54-like
blastp_pdb 3mwy_W 545 1124 + 580 Gaps:83 50.12 800 34.91 2e-20 mol:protein length:800 Chromo domain-containing protein 1
blastp_pdb 1z5z_B 943 1119 + 177 Gaps:10 63.84 271 32.95 3e-20 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_pdb 1z5z_A 943 1119 + 177 Gaps:10 63.84 271 32.95 3e-20 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_uniprot_sprot sp|Q9FIY7|SM3L3_ARATH 199 1142 + 944 Gaps:32 75.18 1277 70.94 0.0 Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS Arabidopsis thaliana GN At5g43530 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FNI6|SM3L2_ARATH 274 1141 + 868 Gaps:58 89.41 1029 55.11 0.0 Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS Arabidopsis thaliana GN At5g22750 PE 2 SV 1
blastp_uniprot_sprot sp|Q4IJ84|RAD5_GIBZE 316 1141 + 826 Gaps:120 79.03 1154 35.09 3e-144 DNA repair protein RAD5 OS Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN RAD5 PE 3 SV 1
blastp_uniprot_sprot sp|P36607|RAD5_SCHPO 316 1141 + 826 Gaps:86 76.79 1133 34.71 7e-144 DNA repair protein rad5 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rad8 PE 1 SV 1
blastp_uniprot_sprot sp|P0CQ66|RAD5_CRYNJ 305 1141 + 837 Gaps:152 81.05 1198 32.23 5e-143 DNA repair protein RAD5 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN RAD5 PE 3 SV 1
blastp_uniprot_sprot sp|P0CQ67|RAD5_CRYNB 305 1141 + 837 Gaps:160 81.05 1198 32.03 2e-142 DNA repair protein RAD5 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN RAD5 PE 3 SV 1
blastp_uniprot_sprot sp|Q4WVM1|RAD5_ASPFU 316 1141 + 826 Gaps:160 76.31 1245 33.16 4e-137 DNA repair protein rad5 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN rad5 PE 3 SV 2
blastp_uniprot_sprot sp|Q7S1P9|RAD5_NEUCR 316 1141 + 826 Gaps:104 74.80 1222 33.26 6e-131 DNA repair protein rad-5 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN rad-5 PE 3 SV 2
blastp_uniprot_sprot sp|Q5BHD6|RAD5_EMENI 316 1124 + 809 Gaps:179 77.37 1202 33.23 8e-126 DNA repair protein rad5 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN rad5 PE 3 SV 1
blastp_uniprot_sprot sp|Q4PGG5|RAD5_USTMA 416 1127 + 712 Gaps:169 63.23 1387 32.73 1e-123 DNA repair protein RAD5 OS Ustilago maydis (strain 521 / FGSC 9021) GN RAD5 PE 3 SV 1
rpsblast_cdd gnl|CDD|201060 540 852 + 313 Gaps:59 95.68 301 36.46 2e-58 pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g. SNF2 STH1 brahma MOT1) DNA repair (e.g. ERCC6 RAD16 RAD5) DNA recombination (e.g. RAD54) and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar ETL1).
rpsblast_cdd gnl|CDD|30899 540 1142 + 603 Gaps:122 58.78 866 31.43 1e-50 COG0553 HepA Superfamily II DNA/RNA helicases SNF2 family [Transcription / DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|178687 545 1142 + 598 Gaps:68 41.05 1033 35.61 2e-23 PLN03142 PLN03142 Probable chromatin-remodeling complex ATPase chain Provisional.

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 900 954 55 SSF57850 none none none
Gene3D 969 1117 149 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 536 735 200 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
PANTHER 604 853 250 PTHR10799:SF164 none none none
SMART 474 752 279 SM00487 none DEAD-like helicases superfamily IPR014001
Pfam 905 944 40 PF00097 none Zinc finger, C3HC4 type (RING finger) IPR018957
SUPERFAMILY 604 773 170 SSF52540 none none IPR027417
SUPERFAMILY 464 494 31 SSF52540 none none IPR027417
SUPERFAMILY 541 576 36 SSF52540 none none IPR027417
SMART 905 944 40 SM00184 none Ring finger IPR001841
Gene3D 901 961 61 G3DSA:3.30.40.10 none none IPR013083
Pfam 284 373 90 PF08797 none HIRAN domain IPR014905
PANTHER 467 495 29 PTHR10799 none none none
Pfam 481 852 372 PF00176 none SNF2 family N-terminal domain IPR000330
SMART 278 374 97 SM00910 none none IPR014905
ProSiteProfiles 975 1142 168 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
PANTHER 541 571 31 PTHR10799 none none none
Pfam 1012 1089 78 PF00271 none Helicase conserved C-terminal domain IPR001650
SMART 1006 1089 84 SM00490 none helicase superfamily c-terminal domain IPR001650
PANTHER 467 495 29 PTHR10799:SF164 none none none
ProSitePatterns 920 929 10 PS00518 none Zinc finger RING-type signature. IPR017907
PANTHER 419 447 29 PTHR10799:SF164 none none none
Gene3D 475 495 21 G3DSA:3.40.50.300 none none IPR027417
Gene3D 540 567 28 G3DSA:3.40.50.300 none none IPR027417
Gene3D 602 733 132 G3DSA:3.40.50.300 none none IPR027417
PANTHER 604 853 250 PTHR10799 none none none
PANTHER 889 1142 254 PTHR10799 none none none
PANTHER 419 447 29 PTHR10799 none none none
ProSiteProfiles 905 945 41 PS50089 none Zinc finger RING-type profile. IPR001841
SUPERFAMILY 966 1133 168 SSF52540 none none IPR027417

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting