Protein : Qrob_P0277220.2 Q. robur
Protein Identifier  ? Qrob_P0277220.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03859 - phosphatidylinositol glycan, class C Code Enzyme  EC:2.4.1.198
Gene Prediction Quality  validated Protein length 

Sequence

Length: 304  
Kegg Orthology  K03859
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006506 GPI anchor biosynthetic process The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage.
GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_021016 1 303 + 303 none 100.00 303 84.82 5e-171 Phosphatidylinositol N-acetylglucosaminyltransferase subunit C putative isoform 1
blastp_kegg lcl|pop:POPTR_0003s07190g 1 303 + 303 Gaps:2 100.00 301 82.39 4e-169 POPTRDRAFT_756997 phosphatidylinositolglycan synthase family protein
blastp_kegg lcl|cmo:103498226 1 303 + 303 none 96.50 314 77.23 8e-169 putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C
blastp_kegg lcl|rcu:RCOM_1197150 1 303 + 303 none 99.34 305 79.54 2e-167 Phosphatidylinositol N-acetylglucosaminyltransferase subunit C putative (EC:2.4.1.198)
blastp_kegg lcl|pop:POPTR_0001s16070g 1 303 + 303 Gaps:2 100.00 301 80.73 8e-166 phosphatidylinositolglycan synthase family protein
blastp_kegg lcl|pxb:103934993 1 303 + 303 none 100.00 303 80.20 2e-163 putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C
blastp_kegg lcl|csv:101226545 1 303 + 303 none 100.00 303 76.24 6e-163 putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like
blastp_kegg lcl|csv:101221254 1 303 + 303 none 100.00 303 76.24 6e-163 putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like
blastp_kegg lcl|pxb:103956265 1 303 + 303 none 100.00 303 80.20 7e-163 putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C
blastp_kegg lcl|gmx:100796558 1 303 + 303 none 100.00 303 81.19 2e-162 putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like
blastp_uniprot_sprot sp|Q54M40|PIGC_DICDI 15 297 + 283 Gaps:10 79.71 345 36.36 4e-45 Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Dictyostelium discoideum GN pigC PE 3 SV 1
blastp_uniprot_sprot sp|Q9CXR4|PIGC_MOUSE 3 302 + 300 Gaps:26 97.64 297 31.72 3e-32 Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Mus musculus GN Pigc PE 2 SV 1
blastp_uniprot_sprot sp|Q92535|PIGC_HUMAN 15 302 + 288 Gaps:23 94.61 297 33.10 6e-32 Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Homo sapiens GN PIGC PE 2 SV 1
blastp_uniprot_sprot sp|Q5PQQ4|PIGC_RAT 12 302 + 291 Gaps:23 95.62 297 31.69 1e-31 Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Rattus norvegicus GN Pigc PE 2 SV 1
blastp_uniprot_sprot sp|O59802|GPI2_SCHPO 13 295 + 283 Gaps:12 86.73 324 29.54 4e-31 Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN gpi2 PE 3 SV 1
blastp_uniprot_sprot sp|Q3ZBX1|PIGC_BOVIN 15 302 + 288 Gaps:29 94.61 297 32.38 9e-31 Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS Bos taurus GN PIGC PE 2 SV 1
rpsblast_cdd gnl|CDD|191522 16 293 + 278 Gaps:10 100.00 268 42.54 2e-76 pfam06432 GPI2 Phosphatidylinositol N-acetylglucosaminyltransferase. Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1 GPI2 and GPI3) and mammals (GPI1 PIG A PIG H and PIG C) respectively.
rpsblast_kog gnl|CDD|38269 6 303 + 298 Gaps:15 99.66 292 40.21 6e-63 KOG3059 KOG3059 KOG3059 N-acetylglucosaminyltransferase complex subunit PIG-C/GPI2 required for phosphatidylinositol biosynthesis [Lipid transport and metabolism].

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 236 253 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 59 78 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 119 137 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 206 229 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 201 205 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 149 168 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 254 258 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 259 279 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 230 235 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 108 118 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 180 200 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 303 303 PTHR12982 "KEGG:00563+2.4.1.198","UniPathway:UPA00196";signature_desc=PHOSPHATIDYLINOSITOL GLYCAN, CLASS C none IPR009450
Phobius 280 303 24 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 16 293 278 PF06432 "KEGG:00563+2.4.1.198","UniPathway:UPA00196" Phosphatidylinositol N-acetylglucosaminyltransferase IPR009450
PIRSF 2 303 302 PIRSF016104 "KEGG:00563+2.4.1.198","UniPathway:UPA00196" none IPR009450
Phobius 90 107 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 138 148 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 58 58 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 169 179 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 79 89 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

6 Localization

Analysis Start End Length
TMHMM 207 229 22
TMHMM 236 253 17
TMHMM 115 137 22
TMHMM 257 279 22
TMHMM 89 106 17
TMHMM 60 79 19

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting