Protein : Qrob_P0274420.2 Q. robur
Protein Identifier  ? Qrob_P0274420.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K00797 - spermidine synthase [EC:2.5.1.16] Code Enzyme  EC:2.5.1.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 371  
Kegg Orthology  K00797
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006595 polyamine metabolic process The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103967225 1 365 + 365 none 98.92 369 82.74 0.0 spermine synthase-like
blastp_kegg lcl|pop:POPTR_0012s01730g 1 358 + 358 none 99.17 361 86.87 0.0 POPTRDRAFT_772373 hypothetical protein
blastp_kegg lcl|pmum:103333625 1 366 + 366 none 100.00 366 85.25 0.0 spermine synthase
blastp_kegg lcl|cit:102621922 1 370 + 370 Gaps:1 100.00 369 86.99 0.0 spermine synthase-like
blastp_kegg lcl|pper:PRUPE_ppa007399mg 1 366 + 366 Gaps:3 100.00 369 84.55 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_015367 1 363 + 363 Gaps:4 98.39 373 87.19 0.0 Spermidine synthase 3 isoform 1
blastp_kegg lcl|mdm:103406584 1 365 + 365 none 98.92 369 84.11 0.0 spermine synthase-like
blastp_kegg lcl|fve:101308515 1 365 + 365 none 98.92 369 83.84 0.0 spermine synthase-like
blastp_kegg lcl|gmx:100815244 1 358 + 358 none 98.90 362 85.75 0.0 spermine synthase-like
blastp_kegg lcl|gmx:100816988 1 358 + 358 none 98.90 362 86.87 0.0 spermine synthase-like
blastp_pdb 2q41_D 44 355 + 312 Gaps:16 88.62 334 71.62 2e-161 mol:protein length:334 Spermidine synthase 1
blastp_pdb 2q41_C 44 355 + 312 Gaps:16 88.62 334 71.62 2e-161 mol:protein length:334 Spermidine synthase 1
blastp_pdb 2q41_B 44 355 + 312 Gaps:16 88.62 334 71.62 2e-161 mol:protein length:334 Spermidine synthase 1
blastp_pdb 2q41_A 44 355 + 312 Gaps:16 88.62 334 71.62 2e-161 mol:protein length:334 Spermidine synthase 1
blastp_pdb 1xj5_D 44 355 + 312 Gaps:16 88.62 334 71.62 2e-161 mol:protein length:334 Spermidine synthase 1
blastp_pdb 1xj5_C 44 355 + 312 Gaps:16 88.62 334 71.62 2e-161 mol:protein length:334 Spermidine synthase 1
blastp_pdb 1xj5_B 44 355 + 312 Gaps:16 88.62 334 71.62 2e-161 mol:protein length:334 Spermidine synthase 1
blastp_pdb 1xj5_A 44 355 + 312 Gaps:16 88.62 334 71.62 2e-161 mol:protein length:334 Spermidine synthase 1
blastp_pdb 2o0l_B 49 356 + 308 Gaps:20 94.74 304 49.31 2e-95 mol:protein length:304 Spermidine synthase
blastp_pdb 2o0l_A 49 356 + 308 Gaps:20 94.74 304 49.31 2e-95 mol:protein length:304 Spermidine synthase
blastp_uniprot_sprot sp|Q94BN2|SPSY_ARATH 1 359 + 359 Gaps:2 100.00 359 83.29 0.0 Spermine synthase OS Arabidopsis thaliana GN SPMS PE 1 SV 1
blastp_uniprot_sprot sp|O82147|SPDE_COFAR 49 355 + 307 Gaps:14 92.72 316 73.04 2e-162 Spermidine synthase OS Coffea arabica PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUB3|SPD1_ARATH 44 355 + 312 Gaps:16 88.62 334 71.62 1e-160 Spermidine synthase 1 OS Arabidopsis thaliana GN SPDSYN1 PE 1 SV 1
blastp_uniprot_sprot sp|O48659|SPD2_HYONI 44 355 + 312 Gaps:14 96.75 308 71.14 3e-160 Spermidine synthase 2 OS Hyoscyamus niger PE 2 SV 1
blastp_uniprot_sprot sp|Q9SMB1|SPD1_ORYSJ 49 355 + 307 Gaps:14 90.71 323 73.04 1e-159 Spermidine synthase 1 OS Oryza sativa subsp. japonica GN SPDSYN1 PE 2 SV 1
blastp_uniprot_sprot sp|Q96556|SPD1_DATST 37 355 + 319 Gaps:14 99.03 308 68.85 5e-159 Spermidine synthase 1 OS Datura stramonium PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZTR1|SPD1_PEA 49 355 + 307 Gaps:15 87.43 334 70.89 5e-158 Spermidine synthase 1 OS Pisum sativum GN SPDSYN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZTR0|SPD2_PEA 49 355 + 307 Gaps:15 85.38 342 71.23 4e-157 Spermidine synthase 2 OS Pisum sativum GN SPDSYN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q96557|SPD2_DATST 44 355 + 312 Gaps:15 93.69 317 69.70 2e-156 Spermidine synthase 2 OS Datura stramonium PE 2 SV 1
blastp_uniprot_sprot sp|O48661|SPD2_ARATH 44 355 + 312 Gaps:14 87.65 340 68.46 1e-155 Spermidine synthase 2 OS Arabidopsis thaliana GN SPDSYN2 PE 1 SV 2

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 146 159 14 PS01330 "KEGG:00270+2.5.1.16","KEGG:00330+2.5.1.16","KEGG:00410+2.5.1.16","KEGG:00480+2.5.1.16","UniPathway:UPA00248" Polyamine biosynthesis (PABS) domain signature. IPR030373
Gene3D 55 119 65 G3DSA:2.30.140.10 none none none
Pfam 55 310 256 PF01564 none Spermine/spermidine synthase none
SUPERFAMILY 71 353 283 SSF53335 none none IPR029063
TIGRFAM 79 348 270 TIGR00417 "KEGG:00270+2.5.1.16","KEGG:00330+2.5.1.16","KEGG:00410+2.5.1.16","KEGG:00480+2.5.1.16","UniPathway:UPA00248" speE: spermidine synthase IPR001045
PANTHER 15 357 343 PTHR11558:SF25 none none none
PANTHER 15 357 343 PTHR11558 none none none
Hamap 54 354 301 MF_00198 "KEGG:00270+2.5.1.16","KEGG:00330+2.5.1.16","KEGG:00410+2.5.1.16","KEGG:00480+2.5.1.16","UniPathway:UPA00248" Polyamine aminopropyltransferase [speE]. IPR001045
Gene3D 124 353 230 G3DSA:3.40.50.150 none none IPR029063
ProSiteProfiles 53 304 252 PS51006 "KEGG:00270+2.5.1.16","KEGG:00330+2.5.1.16","KEGG:00410+2.5.1.16","KEGG:00480+2.5.1.16","UniPathway:UPA00248" Polyamine biosynthesis (PABS) domain profile. IPR030374
PIRSF 42 358 317 PIRSF000502 "KEGG:00270+2.5.1.16","KEGG:00330+2.5.1.16","KEGG:00410+2.5.1.16","KEGG:00480+2.5.1.16","UniPathway:UPA00248" none IPR030668

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting