Protein : Qrob_P0272810.2 Q. robur
Protein Identifier  ? Qrob_P0272810.2 Organism . Name  Quercus robur
Score  45.3 Score Type  egn
Protein Description  (M=1) PF00010//PF01842 - Helix-loop-helix DNA-binding domain // ACT domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 243  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0016597 amino acid binding Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1589780 9 241 + 233 Gaps:8 96.76 247 63.18 1e-98 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10003973mg 2 241 + 240 Gaps:8 96.39 249 62.92 2e-98 hypothetical protein
blastp_kegg lcl|tcc:TCM_033803 10 241 + 232 Gaps:8 90.23 266 63.75 3e-95 Basic helix-loop-helix DNA-binding superfamily protein putative
blastp_kegg lcl|pop:POPTR_0014s02600g 7 241 + 235 Gaps:11 83.16 291 63.64 5e-91 basic helix-loop-helix family protein
blastp_kegg lcl|pper:PRUPE_ppa018148mg 17 241 + 225 Gaps:9 95.61 228 64.22 2e-88 hypothetical protein
blastp_kegg lcl|vvi:100264010 28 241 + 214 Gaps:5 71.15 305 58.99 4e-84 transcription factor bHLH95-like
blastp_kegg lcl|mdm:103431300 3 241 + 239 Gaps:9 99.14 232 57.83 2e-81 transcription factor bHLH95-like
blastp_kegg lcl|pxb:103955115 3 241 + 239 Gaps:12 82.50 280 58.44 6e-80 transcription factor bHLH95-like
blastp_kegg lcl|mdm:103455955 3 241 + 239 Gaps:12 99.14 233 57.58 8e-80 transcription factor bHLH95-like
blastp_kegg lcl|mus:103997517 9 241 + 233 Gaps:5 99.58 237 56.36 1e-79 transcription factor bHLH95
blastp_uniprot_sprot sp|Q9FXA3|BH095_ARATH 10 241 + 232 Gaps:41 82.79 308 36.86 6e-37 Transcription factor bHLH95 OS Arabidopsis thaliana GN BHLH95 PE 2 SV 2
blastp_uniprot_sprot sp|Q56YJ8|FAMA_ARATH 4 237 + 234 Gaps:52 55.56 414 29.13 2e-11 Transcription factor FAMA OS Arabidopsis thaliana GN FMA PE 1 SV 1
blastp_uniprot_sprot sp|Q9T072|BH025_ARATH 14 186 + 173 Gaps:25 45.12 328 29.05 2e-08 Transcription factor bHLH25 OS Arabidopsis thaliana GN BHLH25 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZPY8|AIB_ARATH 8 91 + 84 Gaps:4 14.13 566 32.50 3e-08 Transcription factor ABA-INDUCIBLE bHLH-TYPE OS Arabidopsis thaliana GN AIB PE 2 SV 2
blastp_uniprot_sprot sp|Q39204|MYC2_ARATH 5 197 + 193 Gaps:30 26.16 623 34.97 8e-08 Transcription factor MYC2 OS Arabidopsis thaliana GN MYC2 PE 1 SV 2
blastp_uniprot_sprot sp|O49687|MYC4_ARATH 11 100 + 90 Gaps:9 13.75 589 38.27 1e-07 Transcription factor MYC4 OS Arabidopsis thaliana GN MYC4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SK91|BH094_ARATH 28 90 + 63 Gaps:1 21.05 304 42.19 2e-07 Transcription factor bHLH94 OS Arabidopsis thaliana GN BHLH94 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LNJ5|BH013_ARATH 11 90 + 80 Gaps:8 12.20 590 37.50 3e-07 Transcription factor bHLH13 OS Arabidopsis thaliana GN BHLH13 PE 2 SV 1
blastp_uniprot_sprot sp|Q1PF16|BH019_ARATH 8 100 + 93 Gaps:4 30.17 295 37.08 3e-07 Transcription factor bHLH19 OS Arabidopsis thaliana GN BHLH19 PE 2 SV 1
blastp_uniprot_sprot sp|Q700E4|BH067_ARATH 28 96 + 69 Gaps:5 19.55 358 41.43 4e-07 Transcription factor bHLH67 OS Arabidopsis thaliana GN BHLH67 PE 2 SV 1
rpsblast_cdd gnl|CDD|200925 32 80 + 49 Gaps:1 96.15 52 38.00 2e-08 pfam00010 HLH Helix-loop-helix DNA-binding domain.
rpsblast_cdd gnl|CDD|28964 28 84 + 57 Gaps:2 98.33 60 42.37 7e-08 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 161 214 54 SSF55021 none none none
ProSiteProfiles 29 79 51 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
ProSiteProfiles 165 242 78 PS51671 none ACT domain profile. IPR002912
SUPERFAMILY 27 90 64 SSF47459 none none IPR011598
Gene3D 164 211 48 G3DSA:3.30.70.260 none none none
Gene3D 30 95 66 G3DSA:4.10.280.10 none none IPR011598
Pfam 173 206 34 PF01842 none ACT domain IPR002912
Pfam 32 80 49 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
PANTHER 4 198 195 PTHR11514:SF33 none none none
Coils 69 90 22 Coil none none none
SMART 35 85 51 SM00353 none helix loop helix domain IPR011598
PANTHER 4 198 195 PTHR11514 none none none

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting