Protein : Qrob_P0270350.2 Q. robur
Protein Identifier  ? Qrob_P0270350.2 Organism . Name  Quercus robur
Score  61.2 Score Type  egn
Protein Description  (M=4) K05575 - NADH dehydrogenase I subunit 4 [EC:1.6.5.3] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 588  
Kegg Orthology  K05575
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0 Synonyms

11 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0016651 oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0051539 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0042651 thylakoid membrane The pigmented membrane of any thylakoid.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
GO:0042773 ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP.
GO:0009773 photosynthetic electron transport in photosystem I A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_4g006120 114 585 + 472 Gaps:19 85.69 573 82.48 0.0 NADH dehydrogenase subunit
blastp_kegg lcl|mtr:MTR_7g021720 114 585 + 472 Gaps:33 86.03 587 79.41 0.0 Photosystem I iron-sulfur center
blastp_kegg lcl|cam:101489191 114 585 + 472 Gaps:33 86.03 587 80.40 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic-like
blastp_kegg lcl|pper:PrpeC_p072 191 585 + 395 Gaps:19 82.80 500 86.71 0.0 ndhD NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|pmum:18668091 191 585 + 395 Gaps:19 82.80 500 86.47 0.0 ndhD CP95_p015 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|sly:3950410 190 585 + 396 Gaps:19 83.00 500 82.89 0.0 ndhD LyesC2p017 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|fve:10251583 191 585 + 395 Gaps:19 82.80 500 85.99 0.0 ndhD FvH4_C0105 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|rcu:RCOM_ORF00106 184 585 + 402 Gaps:19 83.20 506 81.95 0.0 ndhD NADH dehydrogenase subunit 4
blastp_kegg lcl|sot:4099905 191 585 + 395 Gaps:19 82.80 500 82.61 0.0 ndhD ndh4 SotuCp075 NADH dehydrogenase subunit 4
blastp_kegg lcl|tcc:ThcaC_p074 191 585 + 395 Gaps:19 82.80 500 84.06 0.0 ndhD NADH-plastoquinone oxidoreductase subunit 4
blastp_pdb 3rko_C 194 573 + 380 Gaps:44 80.55 509 34.39 6e-60 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3rko_M 194 573 + 380 Gaps:44 80.55 509 34.39 6e-60 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3lw5_C 114 186 + 73 Gaps:4 85.19 81 95.65 6e-43 mol:protein length:81 Photosystem I iron-sulfur center
blastp_pdb 2wsf_C 114 186 + 73 Gaps:4 85.19 81 95.65 6e-43 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2wse_C 114 186 + 73 Gaps:4 85.19 81 95.65 6e-43 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2wsc_C 114 186 + 73 Gaps:4 85.19 81 95.65 6e-43 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2o01_C 115 186 + 72 Gaps:4 85.00 80 95.59 4e-42 mol:protein length:80 Photosystem I iron-sulfur center
blastp_pdb 3pcq_C 115 186 + 72 Gaps:4 85.00 80 86.76 3e-40 mol:protein length:80 Photosystem I iron-sulfur center
blastp_pdb 1jb0_C 115 186 + 72 Gaps:4 85.00 80 86.76 3e-40 mol:protein length:80 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 1k0t_A 115 186 + 72 Gaps:4 85.00 80 88.24 3e-40 mol:protein length:80 PSAC SUBUNIT OF PHOTOSYSTEM I
blastp_uniprot_sprot sp|Q2A7B8|NU4C_SOLLC 191 585 + 395 Gaps:19 82.80 500 82.85 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Solanum lycopersicum GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q09WW8|NU4C_MORIN 191 585 + 395 Gaps:19 82.80 500 83.33 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Morus indica GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q2VED0|NU4C_SOLTU 191 585 + 395 Gaps:19 82.80 500 82.37 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Solanum tuberosum GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q68RV6|NU4C_PANGI 191 585 + 395 Gaps:19 82.80 500 81.88 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Panax ginseng GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q33BX2|NU4C_NICTO 191 585 + 395 Gaps:19 82.80 500 82.13 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana tomentosiformis GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q8S8U7|NU4C_ATRBE 191 580 + 390 Gaps:19 81.80 500 82.64 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Atropa belladonna GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|P06262|NU4C_TOBAC 191 585 + 395 Gaps:19 82.80 500 82.13 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana tabacum GN ndhD PE 2 SV 2
blastp_uniprot_sprot sp|Q3C1Q4|NU4C_NICSY 191 585 + 395 Gaps:19 82.80 500 82.13 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana sylvestris GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q1KXQ3|NU4C_HELAN 191 585 + 395 Gaps:19 82.80 500 81.16 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Helianthus annuus GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|B1A984|NU4C_CARPA 191 585 + 395 Gaps:19 82.80 500 83.57 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Carica papaya GN ndhD PE 3 SV 1

49 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 405 415 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 302 330 29 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 192 212 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 381 404 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 331 336 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 500 519 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 61 85 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 121 177 57 G3DSA:3.30.70.20 none none none
Phobius 6 23 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 193 582 390 PTHR22773:SF74 none none none
Phobius 564 582 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 337 361 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 495 499 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 446 463 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 540 558 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 114 144 31 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
ProSitePatterns 124 135 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
Phobius 213 223 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Hamap 1 101 101 MF_01456 none NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. IPR001133
Phobius 475 494 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 337 578 242 TIGR01972 none NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M IPR010227
Phobius 362 380 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 464 474 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 24 29 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 416 434 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 520 539 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 337 573 237 PF00361 "Reactome:REACT_6305" NADH-Ubiquinone/plastoquinone (complex I), various chains IPR001750
PRINTS 549 575 27 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
PRINTS 409 433 25 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
PRINTS 497 516 20 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918

14 Localization

Analysis Start End Length
TMHMM 501 523 22
TMHMM 191 213 22
TMHMM 59 81 22
TMHMM 445 464 19
TMHMM 27 46 19
TMHMM 378 400 22
TMHMM 536 558 22
TMHMM 274 296 22
TMHMM 303 325 22
TMHMM 410 432 22
TMHMM 5 22 17
TMHMM 563 582 19
TMHMM 220 242 22
TMHMM 335 357 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 30   Secretory pathway 1 0.990 0.024 NON-PLANT 30