Protein : Qrob_P0270150.2 Q. robur
Protein Identifier  ? Qrob_P0270150.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03040 - DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 332  
Kegg Orthology  K03040
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:18668064 1 326 + 326 none 100.00 326 88.04 0.0 rpoA CP95_p034 RNA polymerase alpha subunit
blastp_kegg lcl|pper:PrpeC_p054 1 326 + 326 none 100.00 326 88.04 0.0 rpoA RNA polymerase alpha subunit
blastp_kegg lcl|fve:10251553 1 330 + 330 none 99.70 331 85.45 0.0 rpoA FvH4_C0075 RNA polymerase alpha subunit
blastp_kegg lcl|cam:6797532 1 331 + 331 Gaps:2 100.00 333 83.18 0.0 rpoA CiarC_p051 RNA polymerase alpha subunit
blastp_kegg lcl|rcu:RCOM_ORF00076 1 331 + 331 none 99.70 332 81.57 0.0 rpoA RNA polymerase alpha subunit
blastp_kegg lcl|gmx:3989329 1 330 + 330 Gaps:2 99.70 333 83.73 0.0 rpoA GlmaCp053 RNA polymerase alpha chain
blastp_kegg lcl|tcc:ThcaC_p053 1 327 + 327 none 100.00 327 85.93 0.0 rpoA RNA polymerase alpha subunit
blastp_kegg lcl|csv:3429301 1 331 + 331 Gaps:2 100.00 333 82.88 0.0 rpoA CsCp074 RNA polymerase alpha chain
blastp_kegg lcl|pop:Poptr_cp055 1 331 + 331 none 97.64 339 81.27 0.0 rpoA RNA polymerase alpha subunit (EC:2.7.7.6)
blastp_kegg lcl|cit:4271184 1 325 + 325 Gaps:1 99.39 328 83.13 0.0 rpoA CisiCp054 RNA polymerase alpha subunit
blastp_pdb 2gho_B 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 DNA-directed RNA polymerase alpha chain
blastp_pdb 2gho_A 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 DNA-directed RNA polymerase alpha chain
blastp_pdb 1ynn_B 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 DNA-directed RNA polymerase alpha chain
blastp_pdb 1ynn_A 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 DNA-directed RNA polymerase alpha chain
blastp_pdb 1ynj_B 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 DNA-directed RNA polymerase alpha chain
blastp_pdb 1ynj_A 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 DNA-directed RNA polymerase alpha chain
blastp_pdb 1l9z_B 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 RNA POLYMERASE ALPHA SUBUNIT
blastp_pdb 1l9z_A 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 RNA POLYMERASE ALPHA SUBUNIT
blastp_pdb 1l9u_K 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 RNA POLYMERASE ALPHA SUBUNIT
blastp_pdb 1l9u_J 28 218 + 191 Gaps:5 62.42 314 37.76 2e-33 mol:protein length:314 RNA POLYMERASE ALPHA SUBUNIT
blastp_uniprot_sprot sp|Q49KW6|RPOA_EUCGG 1 330 + 330 none 97.92 337 86.06 0.0 DNA-directed RNA polymerase subunit alpha OS Eucalyptus globulus subsp. globulus GN rpoA PE 3 SV 1
blastp_uniprot_sprot sp|Q09G14|RPOA_PLAOC 1 325 + 325 none 96.44 337 84.00 0.0 DNA-directed RNA polymerase subunit alpha OS Platanus occidentalis GN rpoA PE 3 SV 1
blastp_uniprot_sprot sp|Q2PMQ3|RPOA_SOYBN 1 330 + 330 Gaps:2 99.70 333 83.73 0.0 DNA-directed RNA polymerase subunit alpha OS Glycine max GN rpoA PE 3 SV 1
blastp_uniprot_sprot sp|Q9MTJ3|RPOA_OENEH 1 330 + 330 none 90.16 366 83.33 0.0 DNA-directed RNA polymerase subunit alpha OS Oenothera elata subsp. hookeri GN rpoA PE 3 SV 2
blastp_uniprot_sprot sp|Q4VZK3|RPOA_CUCSA 1 331 + 331 Gaps:2 100.00 333 82.88 0.0 DNA-directed RNA polymerase subunit alpha OS Cucumis sativus GN rpoA PE 3 SV 1
blastp_uniprot_sprot sp|Q14FC5|RPOA_POPAL 1 331 + 331 none 97.64 339 81.27 0.0 DNA-directed RNA polymerase subunit alpha OS Populus alba GN rpoA PE 3 SV 1
blastp_uniprot_sprot sp|A4GYU3|RPOA_POPTR 1 331 + 331 none 97.64 339 81.27 0.0 DNA-directed RNA polymerase subunit alpha OS Populus trichocarpa GN rpoA PE 3 SV 1
blastp_uniprot_sprot sp|Q09WY5|RPOA_MORIN 1 326 + 326 Gaps:3 100.00 323 83.59 0.0 DNA-directed RNA polymerase subunit alpha OS Morus indica GN rpoA PE 3 SV 1
blastp_uniprot_sprot sp|Q09ME5|RPOA_CITSI 1 325 + 325 Gaps:1 99.39 328 83.13 0.0 DNA-directed RNA polymerase subunit alpha OS Citrus sinensis GN rpoA PE 3 SV 1
blastp_uniprot_sprot sp|Q2MI69|RPOA_SOLLC 1 325 + 325 none 96.44 337 83.38 0.0 DNA-directed RNA polymerase subunit alpha OS Solanum lycopersicum GN rpoA PE 3 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 269 325 57 G3DSA:1.10.150.20 none none none
SMART 29 232 204 SM00662 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerases D IPR011263
Pfam 66 158 93 PF01000 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb3/RpoA insert domain IPR011262
TIGRFAM 29 325 297 TIGR02027 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" rpoA: DNA-directed RNA polymerase, alpha subunit IPR011773
Pfam 34 226 193 PF01193 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase Rpb3/Rpb11 dimerisation domain IPR009025
PANTHER 10 325 316 PTHR32108:SF0 none none none
ProDom 274 312 39 PD001179 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE IPR011260
SUPERFAMILY 268 325 58 SSF47789 none none none
Gene3D 59 176 118 G3DSA:2.170.120.12 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR011262
Gene3D 177 229 53 G3DSA:3.30.1360.10 none none none
Gene3D 12 57 46 G3DSA:3.30.1360.10 none none none
SUPERFAMILY 178 231 54 SSF55257 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" none IPR009025
SUPERFAMILY 13 59 47 SSF55257 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" none IPR009025
PANTHER 10 325 316 PTHR32108 none none none
SUPERFAMILY 59 177 119 SSF56553 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR011262
Hamap 10 331 322 MF_00059 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" DNA-directed RNA polymerase subunit alpha [rpoA]. IPR011773
Pfam 263 325 63 PF03118 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" Bacterial RNA polymerase, alpha chain C terminal domain IPR011260

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting