Protein : Qrob_P0270140.2 Q. robur
Protein Identifier  ? Qrob_P0270140.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) K02637 - cytochrome b6-f complex subunit 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 175  
Kegg Orthology  K02637
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0042651 thylakoid membrane The pigmented membrane of any thylakoid.
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
GO:0009767 photosynthetic electron transport chain A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_ORF00075 1 174 + 174 none 100.00 174 97.13 2e-116 petD cytochrome b6/f complex subunit IV
blastp_kegg lcl|pda:8890542 1 174 + 174 none 93.05 187 96.55 2e-115 petD PhdaC_p053 cytochrome b6-f complex subunit IV
blastp_kegg lcl|mtr:MTR_4g034790 1 174 + 174 none 100.00 174 95.98 1e-114 Cytochrome b6-f complex subunit
blastp_kegg lcl|brp:103848419 7 174 + 168 Gaps:4 38.14 451 93.60 1e-105 cytochrome b
blastp_kegg lcl|sly:101259972 7 174 + 168 none 16.95 991 98.21 2e-105 photosystem II CP47 chlorophyll apoprotein-like
blastp_kegg lcl|sly:3950401 17 174 + 158 none 98.75 160 98.73 4e-105 petD LyesC2p039 cytochrome b6/f complex subunit IV
blastp_kegg lcl|pmum:18668063 17 174 + 158 none 98.14 161 98.73 4e-105 petD CP95_p035 cytochrome b6/f complex subunit IV
blastp_kegg lcl|sot:4099875 17 174 + 158 none 98.75 160 98.10 5e-105 petD SotuCp053 cytochrome b6/f complex subunit 4
blastp_kegg lcl|vvi:4025130 17 174 + 158 none 98.75 160 98.10 5e-105 petD ViviCp053 cytochrome b6/f complex subunit 4
blastp_kegg lcl|csv:3429267 17 174 + 158 none 98.75 160 98.10 5e-105 petD CsCp073 cytochrome b6/f complex subunit 4
blastp_pdb 2e76_B 19 174 + 156 none 97.50 160 81.41 5e-91 mol:protein length:160 Cytochrome b6-f complex subunit 4
blastp_pdb 2e75_B 19 174 + 156 none 97.50 160 81.41 5e-91 mol:protein length:160 Cytochrome b6-f complex subunit 4
blastp_pdb 2e74_B 19 174 + 156 none 97.50 160 81.41 5e-91 mol:protein length:160 Cytochrome b6-f complex subunit 4
blastp_pdb 2d2c_O 19 174 + 156 none 97.50 160 80.13 9e-90 mol:protein length:160 Cytochrome b6-f complex subunit 4
blastp_pdb 2d2c_B 19 174 + 156 none 97.50 160 80.13 9e-90 mol:protein length:160 Cytochrome b6-f complex subunit 4
blastp_pdb 1vf5_O 19 174 + 156 none 97.50 160 80.13 9e-90 mol:protein length:160 SUBUNIT IV
blastp_pdb 1vf5_B 19 174 + 156 none 97.50 160 80.13 9e-90 mol:protein length:160 SUBUNIT IV
blastp_pdb 2zt9_B 19 174 + 156 none 97.50 160 80.77 2e-89 mol:protein length:160 Cytochrome b6-f complex subunit 4
blastp_pdb 1q90_D 17 173 + 157 none 98.74 159 78.98 4e-89 mol:protein length:159 Cytochrome b6-f complex subunit 4
blastp_pdb 3l75_P 68 167 + 100 Gaps:6 27.37 380 36.54 1e-10 mol:protein length:380 CYTOCHROME B
blastp_uniprot_sprot sp|Q6EW21|PETD_NYMAL 17 174 + 158 none 92.94 170 98.10 1e-106 Cytochrome b6-f complex subunit 4 OS Nymphaea alba GN petD PE 3 SV 1
blastp_uniprot_sprot sp|Q2MI70|PETD_SOLLC 17 174 + 158 none 98.75 160 98.73 1e-106 Cytochrome b6-f complex subunit 4 OS Solanum lycopersicum GN petD PE 3 SV 1
blastp_uniprot_sprot sp|Q2MIF7|PETD_SOLBU 17 174 + 158 none 98.75 160 98.73 1e-106 Cytochrome b6-f complex subunit 4 OS Solanum bulbocastanum GN petD PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZIY8|PETD_VITVI 17 174 + 158 none 98.75 160 98.10 2e-106 Cytochrome b6-f complex subunit 4 OS Vitis vinifera GN petD PE 3 SV 1
blastp_uniprot_sprot sp|P06249|PETD_TOBAC 17 174 + 158 none 98.75 160 98.10 2e-106 Cytochrome b6-f complex subunit 4 OS Nicotiana tabacum GN petD PE 3 SV 2
blastp_uniprot_sprot sp|Q68RX6|PETD_PANGI 17 174 + 158 none 98.75 160 98.10 2e-106 Cytochrome b6-f complex subunit 4 OS Panax ginseng GN petD PE 3 SV 1
blastp_uniprot_sprot sp|Q33C01|PETD_NICTO 17 174 + 158 none 98.75 160 98.10 2e-106 Cytochrome b6-f complex subunit 4 OS Nicotiana tomentosiformis GN petD PE 3 SV 1
blastp_uniprot_sprot sp|Q3C1M4|PETD_NICSY 17 174 + 158 none 98.75 160 98.10 2e-106 Cytochrome b6-f complex subunit 4 OS Nicotiana sylvestris GN petD PE 3 SV 1
blastp_uniprot_sprot sp|Q09WY6|PETD_MORIN 17 174 + 158 none 98.75 160 98.10 2e-106 Cytochrome b6-f complex subunit 4 OS Morus indica GN petD PE 3 SV 1
blastp_uniprot_sprot sp|Q332U6|PETD_LACSA 17 174 + 158 none 98.75 160 98.10 2e-106 Cytochrome b6-f complex subunit 4 OS Lactuca sativa GN petD PE 3 SV 2

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 49 49 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 50 71 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 17 174 158 TIGR01156 none cytb6/f_IV: cytb6/f complex subunit IV IPR005870
PANTHER 17 173 157 PTHR19271 none none none
ProSiteProfiles 79 174 96 PS51003 none Cytochrome b/b6 C-terminal region profile. IPR005798
SUPERFAMILY 21 170 150 SSF81648 none none IPR005798
Hamap 15 174 160 MF_01344 none Cytochrome b6-f complex subunit 4 [petD]. IPR005870
Gene3D 81 168 88 G3DSA:1.10.287.980 none none none
Phobius 72 108 37 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 23 80 58 G3DSA:1.20.5.510 none none none
Phobius 129 139 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 79 165 87 PF00032 none Cytochrome b(C-terminal)/b6/petD IPR005798
Phobius 160 174 15 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 140 159 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 17 173 157 PTHR19271:SF2 none none none
PIRSF 15 174 160 PIRSF000033 none none IPR005870
Phobius 109 128 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

3 Localization

Analysis Start End Length
TMHMM 49 71 22
TMHMM 143 165 22
TMHMM 109 128 19

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting