Protein : Qrob_P0270060.2 Q. robur
Protein Identifier  ? Qrob_P0270060.2 Organism . Name  Quercus robur
Score  47.1 Score Type  egn
Protein Description  (M=3) K02634 - apocytochrome f Gene Prediction Quality  validated
Protein length 

Sequence

Length: 390  
Kegg Orthology  K02634
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0005506 iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
GO:0020037 heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0031361 integral component of thylakoid membrane The component of the thylakoid membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:ThcaC_p032 196 388 + 193 none 84.28 229 89.12 4e-120 cemA chloroplast envelope membrane protein
blastp_kegg lcl|tcc:ThcaC_p033 1 181 + 181 Gaps:1 56.25 320 97.22 6e-120 petA cytochrome f
blastp_kegg lcl|vvi:4025050 1 181 + 181 Gaps:1 56.25 320 96.11 5e-119 petA ViviCp034 apocytochrome f precursor
blastp_kegg lcl|vvi:7498572 1 181 + 181 Gaps:1 56.25 320 96.11 1e-118 petA ViviM_p006 cytochrome f
blastp_kegg lcl|mtr:MetrCp045 1 181 + 181 Gaps:1 56.25 320 95.56 7e-118 petA cytochrome f
blastp_kegg lcl|pmum:18668043 196 388 + 193 none 84.28 229 88.60 2e-117 cemA CP95_p055 chloroplast envelope membrane protein
blastp_kegg lcl|pper:PrpeC_p033 196 388 + 193 none 84.28 229 88.60 2e-117 cemA chloroplast envelope membrane protein
blastp_kegg lcl|pper:PrpeC_p034 1 181 + 181 Gaps:1 56.25 320 95.56 2e-117 petA cytochrome f
blastp_kegg lcl|pmum:18668044 1 181 + 181 Gaps:1 56.25 320 95.56 3e-117 petA CP95_p054 cytochrome f
blastp_kegg lcl|rcu:RCOM_ORF00056 1 181 + 181 Gaps:1 56.25 320 95.00 1e-116 petA cytochrome f
blastp_pdb 2pcf_B 37 181 + 145 none 58.00 250 95.17 5e-96 mol:protein length:250 CYTOCHROME F
blastp_pdb 1ctm_A 37 181 + 145 none 58.00 250 95.17 5e-96 mol:protein length:250 CYTOCHROME F
blastp_pdb 1tkw_B 37 181 + 145 none 57.54 252 95.17 5e-96 mol:protein length:252 Cytochrome f
blastp_pdb 1hcz_A 37 181 + 145 none 57.54 252 95.17 5e-96 mol:protein length:252 CYTOCHROME F
blastp_pdb 1e2z_C 37 194 + 158 Gaps:4 64.54 251 70.37 1e-75 mol:protein length:251 CYTOCHROME F
blastp_pdb 1e2z_B 37 194 + 158 Gaps:4 64.54 251 70.37 1e-75 mol:protein length:251 CYTOCHROME F
blastp_pdb 1e2z_A 37 194 + 158 Gaps:4 64.54 251 70.37 1e-75 mol:protein length:251 CYTOCHROME F
blastp_pdb 1e2w_B 37 210 + 174 Gaps:8 69.32 251 68.97 1e-75 mol:protein length:251 CYTOCHROME F
blastp_pdb 1e2w_A 37 210 + 174 Gaps:8 69.32 251 68.97 1e-75 mol:protein length:251 CYTOCHROME F
blastp_pdb 1ewh_C 37 194 + 158 Gaps:4 64.54 251 70.37 2e-75 mol:protein length:251 CYTOCHROME F
blastp_uniprot_sprot sp|Q2L922|CEMA_GOSHI 196 388 + 193 none 84.28 229 88.60 2e-121 Chloroplast envelope membrane protein OS Gossypium hirsutum GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|Q2L921|CYF_GOSHI 1 181 + 181 Gaps:1 56.25 320 96.67 9e-121 Apocytochrome f OS Gossypium hirsutum GN petA PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ48|CYF_GOSBA 1 181 + 181 Gaps:1 56.25 320 96.67 9e-121 Apocytochrome f OS Gossypium barbadense GN petA PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZJ07|CYF_VITVI 1 181 + 181 Gaps:1 56.25 320 96.11 2e-120 Apocytochrome f OS Vitis vinifera GN petA PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ47|CEMA_GOSBA 196 388 + 193 none 84.28 229 87.56 4e-120 Chloroplast envelope membrane protein OS Gossypium barbadense GN cemA PE 3 SV 1
blastp_uniprot_sprot sp|Q2QD76|CYF_CUCSA 1 181 + 181 Gaps:1 56.25 320 96.67 2e-119 Apocytochrome f OS Cucumis sativus GN petA PE 3 SV 1
blastp_uniprot_sprot sp|B1A948|CYF_CARPA 1 181 + 181 Gaps:1 56.25 320 96.11 3e-118 Apocytochrome f OS Carica papaya GN petA PE 3 SV 1
blastp_uniprot_sprot sp|A4GYS4|CYF_POPTR 1 181 + 181 Gaps:1 56.25 320 95.56 5e-118 Apocytochrome f OS Populus trichocarpa GN petA PE 3 SV 1
blastp_uniprot_sprot sp|Q14FE4|CYF_POPAL 1 181 + 181 Gaps:1 56.25 320 95.56 7e-118 Apocytochrome f OS Populus alba GN petA PE 3 SV 1
blastp_uniprot_sprot sp|B1NWG3|CYF_MANES 1 181 + 181 Gaps:1 56.25 320 95.56 2e-117 Apocytochrome f OS Manihot esculenta GN petA PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 219 389 171 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 196 387 192 PF03040 none CemA family IPR004282
SUPERFAMILY 37 186 150 SSF49441 none none IPR024094
Phobius 201 218 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 200 200 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 37 184 148 G3DSA:2.60.40.830 none none IPR024094
ProSiteProfiles 36 184 149 PS51010 none Cytochrome f family profile. IPR002325
PRINTS 106 126 21 PR00610 none Cytochrome F signature IPR002325
PRINTS 169 189 21 PR00610 none Cytochrome F signature IPR002325
PRINTS 86 105 20 PR00610 none Cytochrome F signature IPR002325
PRINTS 148 168 21 PR00610 none Cytochrome F signature IPR002325
PRINTS 32 43 12 PR00610 none Cytochrome F signature IPR002325
PRINTS 65 85 21 PR00610 none Cytochrome F signature IPR002325
PRINTS 45 64 20 PR00610 none Cytochrome F signature IPR002325
PRINTS 127 147 21 PR00610 none Cytochrome F signature IPR002325

2 Localization

Analysis Start End Length
TMHMM 201 220 19
TMHMM 15 37 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting