Protein : Qrob_P0269990.2 Q. robur
Protein Identifier  ? Qrob_P0269990.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02705 - photosystem II CP43 chlorophyll apoprotein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 133  
Kegg Orthology  K02705
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0019684 photosynthesis, light reaction The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
GO:0016168 chlorophyll binding Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
GO:0009521 photosystem A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species.
GO:0009767 photosynthetic electron transport chain A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:18668018 1 132 + 132 none 27.91 473 100.00 1e-87 psbC CP95_p071 photosystem II CP43 chlorophyll apoprotein
blastp_kegg lcl|pper:PrpeC_p017 1 132 + 132 none 27.91 473 100.00 1e-87 psbC photosystem II CP43 chlorophyll apoprotein
blastp_kegg lcl|pvu:PhvuCp18 1 132 + 132 none 27.91 473 100.00 1e-87 psbC photosystem II 44 kDa protein
blastp_kegg lcl|gmx:3989283 1 132 + 132 none 27.91 473 100.00 1e-87 psbC GlmaCp015 PSII 43 kDa protein
blastp_kegg lcl|cam:6797478 1 132 + 132 none 27.91 473 100.00 1e-87 psbC CiarC_p015 photosystem II 44 kDa protein
blastp_kegg lcl|vvi:4025084 1 132 + 132 none 27.91 473 100.00 1e-87 psbC ViviCp017 PSII 43 kDa protein
blastp_kegg lcl|pop:Poptr_cp017 1 132 + 132 none 27.91 473 100.00 1e-87 psbC photosystem II 44 kDa protein
blastp_kegg lcl|tcc:ThcaC_p017 1 132 + 132 none 27.91 473 100.00 1e-87 psbC photosystem II CP43 chlorophyll apoprotein
blastp_kegg lcl|rcu:RCOM_ORF00030 1 132 + 132 none 27.91 473 100.00 2e-87 psbC photosystem II 44 kDa protein
blastp_kegg lcl|fve:10251506 1 132 + 132 none 27.91 473 100.00 2e-87 psbC FvH4_C0028 photosystem II CP43 chlorophyll apoprotein
blastp_pdb 3a0h_C 1 132 + 132 none 29.53 447 86.36 2e-70 mol:protein length:447 Photosystem II CP43 protein
blastp_pdb 3a0b_C 1 132 + 132 none 29.53 447 86.36 2e-70 mol:protein length:447 Photosystem II CP43 protein
blastp_pdb 3arc_C 1 132 + 132 none 29.01 455 86.36 2e-70 mol:protein length:455 Photosystem II core light harvesting protein
blastp_pdb 2axt_C 1 132 + 132 none 27.91 473 86.36 2e-70 mol:protein length:473 photosystem II CP43 protein
blastp_pdb 1s5l_C 1 132 + 132 none 27.91 473 86.36 2e-70 mol:protein length:473 photosystem II CP43 protein
blastp_pdb 3a0h_c 1 132 + 132 none 29.53 447 86.36 2e-70 mol:protein length:447 Photosystem II CP43 protein
blastp_pdb 3a0b_c 1 132 + 132 none 29.53 447 86.36 2e-70 mol:protein length:447 Photosystem II CP43 protein
blastp_pdb 3arc_c 1 132 + 132 none 29.01 455 86.36 2e-70 mol:protein length:455 Photosystem II core light harvesting protein
blastp_pdb 3bz2_C 1 132 + 132 none 27.91 473 86.36 2e-70 mol:protein length:473 Photosystem II CP43 protein
blastp_pdb 3bz1_C 1 132 + 132 none 27.91 473 86.36 2e-70 mol:protein length:473 Photosystem II CP43 protein
blastp_uniprot_sprot sp|Q9BBT1|PSBC_LOTJA 1 132 + 132 none 28.63 461 100.00 4e-89 Photosystem II CP43 chlorophyll apoprotein OS Lotus japonicus GN psbC PE 1 SV 2
blastp_uniprot_sprot sp|Q09G50|PSBC_PLAOC 1 132 + 132 none 28.63 461 100.00 4e-89 Photosystem II CP43 chlorophyll apoprotein OS Platanus occidentalis GN psbC PE 3 SV 1
blastp_uniprot_sprot sp|Q06H01|PSBC_DRIGR 1 132 + 132 none 27.91 473 100.00 4e-89 Photosystem II CP43 chlorophyll apoprotein OS Drimys granadensis GN psbC PE 3 SV 1
blastp_uniprot_sprot sp|Q2PMT9|PSBC_SOYBN 1 132 + 132 none 27.91 473 100.00 4e-89 Photosystem II CP43 chlorophyll apoprotein OS Glycine max GN psbC PE 3 SV 1
blastp_uniprot_sprot sp|A4GGA1|PSBC_PHAVU 1 132 + 132 none 27.91 473 100.00 4e-89 Photosystem II CP43 chlorophyll apoprotein OS Phaseolus vulgaris GN psbC PE 3 SV 1
blastp_uniprot_sprot sp|Q49L02|PSBC_EUCGG 1 132 + 132 none 27.91 473 100.00 5e-89 Photosystem II CP43 chlorophyll apoprotein OS Eucalyptus globulus subsp. globulus GN psbC PE 3 SV 1
blastp_uniprot_sprot sp|A6MMB8|PSBC_CHLSC 1 132 + 132 none 27.91 473 100.00 5e-89 Photosystem II CP43 chlorophyll apoprotein OS Chloranthus spicatus GN psbC PE 3 SV 1
blastp_uniprot_sprot sp|B2XWK1|PSBC_FAGEA 1 132 + 132 none 27.91 473 100.00 5e-89 Photosystem II CP43 chlorophyll apoprotein OS Fagopyrum esculentum subsp. ancestrale GN psbC PE 3 SV 1
blastp_uniprot_sprot sp|B5LMM0|PSBC_CICAR 1 132 + 132 none 27.91 473 100.00 5e-89 Photosystem II CP43 chlorophyll apoprotein OS Cicer arietinum GN psbC PE 3 SV 1
blastp_uniprot_sprot sp|A6MMU0|PSBC_ILLOL 1 132 + 132 none 27.91 473 100.00 5e-89 Photosystem II CP43 chlorophyll apoprotein OS Illicium oligandrum GN psbC PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1 130 130 PF00421 none Photosystem II protein IPR000932
SUPERFAMILY 1 131 131 SSF161077 none none IPR000932
Phobius 1 83 83 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 1 58 58 G3DSA:1.10.10.670 none none none
Phobius 84 102 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 103 132 30 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting