Protein : Qrob_P0268190.2 Q. robur
Protein Identifier  ? Qrob_P0268190.2 Organism . Name  Quercus robur
Score  99.1 Score Type  egn
Protein Description  (M=2) 2.1.1.35 - tRNA (uracil(54)-C(5))-methyltransferase. Code Enzyme  EC:2.1.1.35
Gene Prediction Quality  validated Protein length 

Sequence

Length: 876  
Kegg Orthology  K15332
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0008173 RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262197 47 875 + 829 Gaps:60 99.05 843 68.26 0.0 zinc finger CCCH domain-containing protein 24-like
blastp_kegg lcl|tcc:TCM_042040 7 875 + 869 Gaps:78 100.00 845 69.70 0.0 Zinc finger family protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa001376mg 82 875 + 794 Gaps:67 94.66 842 71.14 0.0 hypothetical protein
blastp_kegg lcl|pmum:103325204 82 875 + 794 Gaps:64 94.67 845 70.50 0.0 zinc finger CCCH domain-containing protein 24
blastp_kegg lcl|rcu:RCOM_0154700 98 875 + 778 Gaps:42 90.85 863 69.64 0.0 RNA m5u methyltransferase putative
blastp_kegg lcl|cic:CICLE_v10027798mg 17 875 + 859 Gaps:93 99.53 860 68.11 0.0 hypothetical protein
blastp_kegg lcl|cit:102606993 17 875 + 859 Gaps:93 99.53 860 68.11 0.0 zinc finger CCCH domain-containing protein 24-like
blastp_kegg lcl|pxb:103941090 7 875 + 869 Gaps:107 100.00 830 67.71 0.0 zinc finger CCCH domain-containing protein 24-like
blastp_kegg lcl|cmo:103501945 52 875 + 824 Gaps:127 98.20 887 63.15 0.0 zinc finger CCCH domain-containing protein 24
blastp_kegg lcl|fve:101314834 79 875 + 797 Gaps:87 95.30 829 68.61 0.0 zinc finger CCCH domain-containing protein 24-like
blastp_pdb 2bh2_B 578 671 + 94 none 21.71 433 30.85 2e-08 mol:protein length:433 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA
blastp_pdb 2bh2_A 578 671 + 94 none 21.71 433 30.85 2e-08 mol:protein length:433 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA
blastp_pdb 1uwv_A 578 671 + 94 none 21.71 433 30.85 2e-08 mol:protein length:433 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA
blastp_uniprot_sprot sp|Q8L7S3|C3H24_ARATH 55 875 + 821 Gaps:133 99.63 809 58.93 0.0 Zinc finger CCCH domain-containing protein 24 OS Arabidopsis thaliana GN At2g28450 PE 2 SV 1
blastp_uniprot_sprot sp|Q8IZ69|TRM2A_HUMAN 316 875 + 560 Gaps:65 66.56 625 42.79 5e-48 tRNA (uracil-5-)-methyltransferase homolog A OS Homo sapiens GN TRMT2A PE 1 SV 2
blastp_uniprot_sprot sp|Q96GJ1|TRM2_HUMAN 279 875 + 597 Gaps:69 89.29 504 38.89 4e-43 tRNA (uracil(54)-C(5))-methyltransferase homolog OS Homo sapiens GN TRMT2B PE 2 SV 1
blastp_uniprot_sprot sp|Q5RFM7|TRM2_PONAB 279 875 + 597 Gaps:69 92.59 486 38.44 9e-43 tRNA (uracil(54)-C(5))-methyltransferase homolog OS Pongo abelii GN TRMT2B PE 2 SV 1
blastp_uniprot_sprot sp|Q8BQJ6|TRM2_MOUSE 318 875 + 558 Gaps:64 83.98 493 40.10 7e-42 tRNA (uracil(54)-C(5))-methyltransferase homolog OS Mus musculus GN Trmt2b PE 2 SV 1
blastp_uniprot_sprot sp|Q8BNV1|TRM2A_MOUSE 316 875 + 560 Gaps:67 66.55 574 40.31 1e-40 tRNA (uracil-5-)-methyltransferase homolog A OS Mus musculus GN Trmt2a PE 2 SV 1
blastp_uniprot_sprot sp|A4QP75|TRM2B_DANRE 318 875 + 558 Gaps:88 85.00 480 37.75 1e-29 tRNA (uracil(54)-C(5))-methyltransferase homolog-B OS Danio rerio GN trmt2b PE 2 SV 2
blastp_uniprot_sprot sp|Q74I68|Y1698_LACJO 323 681 + 359 Gaps:76 64.22 450 36.33 6e-27 Uncharacterized RNA methyltransferase LJ_1698 OS Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN LJ_1698 PE 3 SV 1
blastp_uniprot_sprot sp|Q8R918|Y1812_THETN 323 679 + 357 Gaps:79 63.72 452 37.50 3e-24 Uncharacterized RNA methyltransferase TTE1812 OS Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN TTE1812 PE 3 SV 1
blastp_uniprot_sprot sp|Q97LN4|Y523_CLOAB 323 679 + 357 Gaps:86 63.26 460 32.65 3e-22 Uncharacterized RNA methyltransferase CA_C0523 OS Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN CA_C0523 PE 3 SV 1
rpsblast_cdd gnl|CDD|32446 323 690 + 368 Gaps:81 66.44 432 35.19 9e-37 COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|129571 323 679 + 357 Gaps:68 67.52 431 31.27 5e-25 TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
rpsblast_cdd gnl|CDD|179588 584 688 + 105 Gaps:9 31.11 315 33.67 1e-10 PRK03522 rumB 23S rRNA methyluridine methyltransferase Reviewed.
rpsblast_cdd gnl|CDD|131140 584 664 + 81 none 21.66 374 35.80 1e-10 TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
rpsblast_cdd gnl|CDD|183875 544 667 + 124 Gaps:14 25.73 443 33.33 2e-09 PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase Reviewed.
rpsblast_cdd gnl|CDD|206018 610 671 + 62 Gaps:3 43.05 151 30.77 1e-08 pfam13847 Methyltransf_31 Methyltransferase domain. This family appears to be have methyltransferase activity.
rpsblast_cdd gnl|CDD|179917 761 875 + 115 Gaps:43 20.44 362 44.59 4e-08 PRK05031 PRK05031 tRNA (uracil-5-)-methyltransferase Validated.

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 616 674 59 PF13847 none Methyltransferase domain IPR025714
PANTHER 313 548 236 PTHR11061 none none none
PANTHER 840 875 36 PTHR11061:SF24 none none none
SUPERFAMILY 97 132 36 SSF90229 none none none
ProSiteProfiles 319 875 557 PS51687 none SAM-dependent methyltransferase RNA m(5)U-type domain profile. IPR010280
PANTHER 840 875 36 PTHR11061 none none none
PANTHER 564 681 118 PTHR11061 none none none
Gene3D 97 133 37 G3DSA:4.10.1000.10 none none IPR000571
Pfam 758 810 53 PF05958 none tRNA (Uracil-5-)-methyltransferase IPR010280
Gene3D 570 672 103 G3DSA:3.40.50.150 none none IPR029063
Gene3D 759 814 56 G3DSA:3.40.50.150 none none IPR029063
Gene3D 850 875 26 G3DSA:3.40.50.150 none none IPR029063
PANTHER 758 814 57 PTHR11061 none none none
ProSitePatterns 770 802 33 PS01230 none RNA methyltransferase trmA family signature 1. IPR030390
SUPERFAMILY 555 672 118 SSF53335 none none IPR029063
SUPERFAMILY 321 347 27 SSF53335 none none IPR029063
SUPERFAMILY 510 518 9 SSF53335 none none IPR029063
SUPERFAMILY 762 875 114 SSF53335 none none IPR029063
SUPERFAMILY 379 482 104 SSF53335 none none IPR029063
Coils 329 350 22 Coil none none none
ProSiteProfiles 99 128 30 PS50103 none Zinc finger C3H1-type profile. IPR000571
SMART 99 127 29 SM00356 none zinc finger IPR000571
PANTHER 564 681 118 PTHR11061:SF24 none none none
PANTHER 758 814 57 PTHR11061:SF24 none none none
PANTHER 313 548 236 PTHR11061:SF24 none none none
Pfam 100 127 28 PF00642 none Zinc finger C-x8-C-x5-C-x3-H type (and similar) IPR000571

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting