Protein : Qrob_P0265870.2 Q. robur
Protein Identifier  ? Qrob_P0265870.2 Organism . Name  Quercus robur
Score  90.0 Score Type  egn
Protein Description  (M=13) PTHR11064 - CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 177  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_001G174600g 1 165 + 165 Gaps:4 90.16 183 87.27 1e-95 hypothetical protein
blastp_kegg lcl|gmx:100798667 1 159 + 159 Gaps:4 92.98 171 87.42 1e-92 nuclear transcription factor Y subunit B-10-like
blastp_kegg lcl|gmx:100820170 1 159 + 159 Gaps:4 92.98 171 86.79 4e-92 nuclear transcription factor Y subunit B-8-like
blastp_kegg lcl|cit:102624322 2 173 + 172 Gaps:9 95.98 174 83.23 1e-90 nuclear transcription factor Y subunit B-10-like
blastp_kegg lcl|cmo:103486448 1 159 + 159 Gaps:4 91.91 173 84.91 3e-90 nuclear transcription factor Y subunit B-1
blastp_kegg lcl|csv:101212699 1 159 + 159 Gaps:4 91.91 173 84.91 3e-90 nuclear transcription factor Y subunit B-8-like
blastp_kegg lcl|pop:POPTR_0016s08600g 2 158 + 157 Gaps:6 90.34 176 86.16 7e-90 POPTRDRAFT_576644 CCAAT-box binding transcription factor family protein
blastp_kegg lcl|sly:101258181 5 159 + 155 Gaps:3 84.04 188 81.01 1e-88 nuclear transcription factor Y subunit B-8-like
blastp_kegg lcl|mtr:MTR_7g100650 1 159 + 159 Gaps:4 92.98 171 83.65 3e-88 Nuclear transcription factor Y subunit B-3
blastp_kegg lcl|tcc:TCM_022083 10 159 + 150 Gaps:3 64.26 235 87.42 6e-88 Nuclear transcription factor Y subunit B-10 isoform 1
blastp_pdb 1n1j_A 25 117 + 93 none 100.00 93 67.74 4e-42 mol:protein length:93 NF-YB
blastp_pdb 1jfi_B 30 112 + 83 Gaps:1 45.81 179 37.80 2e-11 mol:protein length:179 Transcription Regulator NC2 beta chain
blastp_pdb 2bym_D 27 116 + 90 none 70.31 128 31.11 5e-07 mol:protein length:128 CHRAC-14
blastp_pdb 2bym_B 27 116 + 90 none 70.31 128 31.11 5e-07 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_D 27 116 + 90 none 70.31 128 31.11 5e-07 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_B 27 116 + 90 none 70.31 128 31.11 5e-07 mol:protein length:128 CHRAC-14
blastp_uniprot_sprot sp|Q8VYK4|NFYB8_ARATH 7 149 + 143 Gaps:6 86.13 173 76.51 2e-74 Nuclear transcription factor Y subunit B-8 OS Arabidopsis thaliana GN NFYB8 PE 2 SV 1
blastp_uniprot_sprot sp|Q67XJ2|NFYBA_ARATH 1 159 + 159 Gaps:7 93.18 176 76.83 2e-74 Nuclear transcription factor Y subunit B-10 OS Arabidopsis thaliana GN NFYB10 PE 2 SV 1
blastp_uniprot_sprot sp|Q60EQ4|NFYB3_ORYSJ 26 159 + 134 Gaps:8 76.76 185 70.42 5e-62 Nuclear transcription factor Y subunit B-3 OS Oryza sativa subsp. japonica GN NFYB3 PE 1 SV 2
blastp_uniprot_sprot sp|P25209|NFYB_MAIZE 26 159 + 134 Gaps:8 79.33 179 71.13 9e-62 Nuclear transcription factor Y subunit B OS Zea mays GN NFY2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLG0|NFYB1_ARATH 1 132 + 132 Gaps:9 90.07 141 77.17 7e-61 Nuclear transcription factor Y subunit B-1 OS Arabidopsis thaliana GN NFYB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5QMG3|NFYB2_ORYSJ 14 159 + 146 Gaps:7 85.96 178 64.71 1e-59 Nuclear transcription factor Y subunit B-2 OS Oryza sativa subsp. japonica GN NFYB2 PE 2 SV 1
blastp_uniprot_sprot sp|O23310|NFYB3_ARATH 7 133 + 127 Gaps:4 76.40 161 68.29 4e-53 Nuclear transcription factor Y subunit B-3 OS Arabidopsis thaliana GN NFYB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q65XK1|NFYB4_ORYSJ 27 135 + 109 Gaps:3 76.92 143 72.73 3e-50 Nuclear transcription factor Y subunit B-4 OS Oryza sativa subsp. japonica GN NFYB4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FGJ3|NFYB2_ARATH 27 117 + 91 none 47.89 190 81.32 6e-50 Nuclear transcription factor Y subunit B-2 OS Arabidopsis thaliana GN NFYB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIT9|NFYB7_ARATH 3 122 + 120 Gaps:9 58.14 215 63.20 4e-48 Nuclear transcription factor Y subunit B-7 OS Arabidopsis thaliana GN NFYB7 PE 2 SV 1
rpsblast_cdd gnl|CDD|201453 31 96 + 66 Gaps:1 100.00 65 50.77 1e-19 pfam00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone. This family includes archaebacterial histones and histone like transcription factors from eukaryotes.
rpsblast_cdd gnl|CDD|32219 23 106 + 84 Gaps:2 90.11 91 31.71 8e-13 COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics].
rpsblast_cdd gnl|CDD|34751 33 117 + 85 none 57.43 148 29.41 1e-08 COG5150 COG5150 Class 2 transcription repressor NC2 beta subunit (Dr1) [Transcription].
rpsblast_kog gnl|CDD|36087 1 151 + 151 Gaps:3 91.67 168 57.79 7e-50 KOG0869 KOG0869 KOG0869 CCAAT-binding factor subunit A (HAP3) [Transcription].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 60 78 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 98 116 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 79 97 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
Pfam 32 96 65 PF00808 none Histone-like transcription factor (CBF/NF-Y) and archaeal histone IPR003958
ProSitePatterns 63 79 17 PS00685 none NF-YB/HAP3 subunit signature. IPR003956
SUPERFAMILY 29 139 111 SSF47113 none none IPR009072
PANTHER 5 152 148 PTHR11064 none none none
Gene3D 21 135 115 G3DSA:1.10.20.10 none none IPR009072

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting