Protein : Qrob_P0265400.2 Q. robur
Protein Identifier  ? Qrob_P0265400.2 Organism . Name  Quercus robur
Score  5.1 Score Type  egn
Protein Description  (M=2) K14792 - rRNA biogenesis protein RRP5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1374  
Kegg Orthology  K14792
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103339605 37 1370 + 1334 Gaps:31 68.24 1930 73.73 0.0 protein RRP5 homolog
blastp_kegg lcl|tcc:TCM_025027 37 1373 + 1337 Gaps:34 71.98 1824 73.42 0.0 RNA binding RNA binding isoform 1
blastp_kegg lcl|cit:102625636 37 1373 + 1337 Gaps:104 80.92 1934 67.99 0.0 protein RRP5 homolog
blastp_kegg lcl|cic:CICLE_v10013867mg 37 1373 + 1337 Gaps:50 66.72 1935 75.29 0.0 hypothetical protein
blastp_kegg lcl|vvi:100262322 38 1373 + 1336 Gaps:65 68.28 1879 74.59 0.0 protein RRP5 homolog
blastp_kegg lcl|rcu:RCOM_0036510 37 1373 + 1337 Gaps:82 99.17 1330 70.89 0.0 programmed cell death protein putative
blastp_kegg lcl|pper:PRUPE_ppa000079mg 37 1341 + 1305 Gaps:45 66.91 1904 73.16 0.0 hypothetical protein
blastp_kegg lcl|fve:101294678 37 1373 + 1337 Gaps:39 70.10 1866 71.02 0.0 protein RRP5 homolog
blastp_kegg lcl|gmx:100793149 37 1373 + 1337 Gaps:42 67.97 1914 70.48 0.0 protein RRP5 homolog
blastp_kegg lcl|pop:POPTR_0016s06250g 3 1373 + 1371 Gaps:47 71.98 1856 68.79 0.0 POPTRDRAFT_256037 hypothetical protein
blastp_pdb 2k4k_A 901 974 + 74 Gaps:1 56.15 130 31.51 7e-08 mol:protein length:130 General stress protein 13
blastp_uniprot_sprot sp|A7MB10|RRP5_BOVIN 35 1370 + 1336 Gaps:284 75.72 1874 35.24 7e-111 Protein RRP5 homolog OS Bos taurus GN PDCD11 PE 2 SV 1
blastp_uniprot_sprot sp|Q05022|RRP5_YEAST 48 1370 + 1323 Gaps:224 70.27 1729 33.66 5e-105 rRNA biogenesis protein RRP5 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RRP5 PE 1 SV 1
blastp_uniprot_sprot sp|O74835|RRP5_SCHPO 459 1368 + 910 Gaps:197 76.57 1690 29.98 3e-100 rRNA biogenesis protein rrp5 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rrp5 PE 1 SV 1
blastp_uniprot_sprot sp|Q14690|RRP5_HUMAN 8 1370 + 1363 Gaps:391 96.47 1871 33.91 1e-77 Protein RRP5 homolog OS Homo sapiens GN PDCD11 PE 1 SV 3
blastp_uniprot_sprot sp|Q6NS46|RRP5_MOUSE 35 1370 + 1336 Gaps:190 73.52 1862 31.34 3e-74 Protein RRP5 homolog OS Mus musculus GN Pdcd11 PE 2 SV 2
blastp_uniprot_sprot sp|Q9Z8M3|RS1_CHLPN 640 985 + 346 Gaps:97 73.45 580 36.38 4e-17 30S ribosomal protein S1 OS Chlamydia pneumoniae GN rpsA PE 3 SV 1
blastp_uniprot_sprot sp|O06147|RS1_MYCTU 601 1001 + 401 Gaps:60 74.22 481 28.57 4e-16 30S ribosomal protein S1 OS Mycobacterium tuberculosis GN rpsA PE 3 SV 1
blastp_uniprot_sprot sp|P46836|RS1_MYCLE 601 1001 + 401 Gaps:66 74.22 481 29.41 7e-16 30S ribosomal protein S1 OS Mycobacterium leprae (strain TN) GN rpsA PE 3 SV 2
blastp_uniprot_sprot sp|O06000|RS1H_BACC1 595 981 + 387 Gaps:59 90.58 382 30.64 7e-16 30S ribosomal protein S1 homolog OS Bacillus cereus (strain ATCC 10987) GN BCE_1625 PE 3 SV 1
blastp_uniprot_sprot sp|Q49XT0|RS1_STAS1 721 1004 + 284 Gaps:56 69.47 393 43.96 8e-16 30S ribosomal protein S1 OS Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN rpsA PE 3 SV 1
rpsblast_cdd gnl|CDD|30885 37 1005 + 969 Gaps:402 97.41 541 59.01 5e-29 COG0539 RpsA Ribosomal protein S1 [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|88463 902 977 + 76 none 98.70 77 47.37 3e-20 cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2 whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea..
rpsblast_cdd gnl|CDD|180520 640 1004 + 365 Gaps:111 63.72 565 40.28 9e-20 PRK06299 rpsA 30S ribosomal protein S1 Reviewed.
rpsblast_cdd gnl|CDD|178853 592 982 + 391 Gaps:57 54.10 647 29.71 1e-18 PRK00087 PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein Reviewed.
rpsblast_cdd gnl|CDD|211602 702 976 + 275 Gaps:81 97.29 516 31.08 4e-18 TIGR00717 rpsA ribosomal protein S1. This model describes ribosomal protein S1 RpsA. This protein is found in most bacterial genomes in a single copy but is not present in the Mycoplasmas. It is heterogeneous with respect to the number of repeats of the S1 RNA binding domain described by PFAM HMM pfam00575: six repeats in E. coli and most other bacteria four in Bacillus subtilis and some other species. rpsA is an essential gene in E. coli but not in B. subtilis. It is associated with the cytidylate kinase gene cmk in many species and fused to it in Treponema pallidum. RpsA is proposed to assist in mRNA degradation. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
rpsblast_cdd gnl|CDD|180655 600 992 + 393 Gaps:72 92.56 390 26.87 9e-18 PRK06676 rpsA 30S ribosomal protein S1 Reviewed.
rpsblast_cdd gnl|CDD|88458 604 675 + 72 none 98.63 73 40.28 1e-17 cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2 whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea..
rpsblast_cdd gnl|CDD|88427 171 973 + 803 Gaps:18 98.80 83 63.41 3e-15 cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2 whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea..
rpsblast_cdd gnl|CDD|181161 601 989 + 389 Gaps:83 71.60 486 32.47 5e-14 PRK07899 rpsA 30S ribosomal protein S1 Reviewed.

53 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 1138 1175 38 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 1179 1210 32 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 1104 1136 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 1281 1313 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 1315 1350 36 SM00386 none HAT (Half-A-TPR) repeats IPR003107
ProSiteProfiles 604 675 72 PS50126 none S1 domain profile. IPR003029
SUPERFAMILY 599 682 84 SSF50249 none none IPR012340
SUPERFAMILY 804 886 83 SSF50249 none none IPR012340
ProSiteProfiles 706 780 75 PS50126 none S1 domain profile. IPR003029
SUPERFAMILY 307 378 72 SSF50249 none none IPR012340
Gene3D 806 885 80 G3DSA:2.40.50.140 none none IPR012340
Gene3D 700 780 81 G3DSA:2.40.50.140 none none IPR012340
Gene3D 599 674 76 G3DSA:2.40.50.140 none none IPR012340
Gene3D 493 581 89 G3DSA:2.40.50.140 none none IPR012340
Gene3D 176 272 97 G3DSA:2.40.50.140 none none IPR012340
ProSiteProfiles 314 378 65 PS50126 none S1 domain profile. IPR003029
ProSiteProfiles 904 974 71 PS50126 none S1 domain profile. IPR003029
ProSiteProfiles 506 580 75 PS50126 none S1 domain profile. IPR003029
ProSiteProfiles 92 164 73 PS50126 none S1 domain profile. IPR003029
ProSiteProfiles 814 883 70 PS50126 none S1 domain profile. IPR003029
Pfam 1272 1369 98 PF05843 none Suppressor of forked protein (Suf) IPR008847
ProSiteProfiles 184 270 87 PS50126 none S1 domain profile. IPR003029
PANTHER 407 675 269 PTHR23270:SF5 none none none
PANTHER 37 241 205 PTHR23270:SF5 none none none
PANTHER 37 241 205 PTHR23270 none none none
PANTHER 259 300 42 PTHR23270 none none none
PANTHER 692 1370 679 PTHR23270:SF5 none none none
SMART 182 270 89 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
SMART 902 974 73 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
SMART 812 883 72 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Secretory pathway 5 0.636 0.045 NON-PLANT 24