Protein : Qrob_P0264950.2 Q. robur
Protein Identifier  ? Qrob_P0264950.2 Organism . Name  Quercus robur
Score  83.3 Score Type  egn
Protein Description  (M=1) K09595 - minor histocompatibility antigen H13 [EC:3.4.23.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 305  
Kegg Orthology  K09595
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0004190 aspartic-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103431326 1 298 + 298 Gaps:18 92.67 341 84.81 3e-179 signal peptide peptidase-like
blastp_kegg lcl|pper:PRUPE_ppa008219mg 1 298 + 298 Gaps:18 92.67 341 85.13 4e-179 hypothetical protein
blastp_kegg lcl|tcc:TCM_040944 1 298 + 298 Gaps:18 92.94 340 84.49 6e-179 Signal peptide peptidase isoform 1
blastp_kegg lcl|pxb:103957480 1 298 + 298 Gaps:18 92.40 342 84.49 1e-178 signal peptide peptidase
blastp_kegg lcl|vvi:100243157 1 298 + 298 Gaps:18 92.67 341 84.49 5e-178 minor histocompatibility antigen H13-like
blastp_kegg lcl|mdm:103410744 1 298 + 298 Gaps:18 92.67 341 83.86 1e-177 signal peptide peptidase-like
blastp_kegg lcl|mdm:103441182 1 298 + 298 Gaps:18 92.67 341 83.86 1e-177 signal peptide peptidase
blastp_kegg lcl|pop:POPTR_0009s07580g 1 298 + 298 Gaps:18 92.67 341 84.18 2e-177 POPTRDRAFT_833167 signal peptide peptidase family protein
blastp_kegg lcl|pmum:103320178 1 298 + 298 Gaps:18 92.67 341 84.18 2e-177 signal peptide peptidase
blastp_kegg lcl|cit:102611548 1 296 + 296 Gaps:18 91.81 342 84.71 4e-177 signal peptide peptidase-like
blastp_uniprot_sprot sp|O81062|SIP_ARATH 1 298 + 298 Gaps:18 91.86 344 78.48 3e-165 Signal peptide peptidase OS Arabidopsis thaliana GN SPP PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZGL9|SIP1_ORYSJ 1 298 + 298 Gaps:18 92.13 343 77.53 3e-161 Signal peptide peptidase 1 OS Oryza sativa subsp. japonica GN SPP1 PE 2 SV 1
blastp_uniprot_sprot sp|B9FJ61|SIP2_ORYSJ 1 298 + 298 Gaps:18 92.13 343 76.90 4e-160 Signal peptide peptidase 2 OS Oryza sativa subsp. japonica GN SPP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D8V0|HM13_MOUSE 29 300 + 272 Gaps:36 81.48 378 43.83 3e-69 Minor histocompatibility antigen H13 OS Mus musculus GN Hm13 PE 1 SV 1
blastp_uniprot_sprot sp|Q8TCT9|HM13_HUMAN 29 300 + 272 Gaps:36 81.70 377 43.18 6e-69 Minor histocompatibility antigen H13 OS Homo sapiens GN HM13 PE 1 SV 1
blastp_uniprot_sprot sp|Q9UTA3|YL8H_SCHPO 30 282 + 253 Gaps:21 86.78 295 37.50 1e-44 Probable intramembrane protease C25B8.17 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC25B8.17 PE 3 SV 1
blastp_uniprot_sprot sp|P49049|IMP2_CAEEL 117 280 + 164 Gaps:19 39.10 468 49.18 4e-43 Intramembrane protease 2 OS Caenorhabditis elegans GN imp-2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7G7C7|SIPL1_ORYSJ 44 283 + 240 Gaps:80 80.32 371 35.23 2e-27 Signal peptide peptidase-like 1 OS Oryza sativa subsp. japonica GN SPPL1 PE 2 SV 1
blastp_uniprot_sprot sp|P34248|YKK0_YEAST 137 296 + 160 Gaps:21 30.49 587 38.55 5e-26 Probable intramembrane protease YKL100C OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN YKL100C PE 1 SV 1
blastp_uniprot_sprot sp|Q93Z32|SIPL1_ARATH 29 283 + 255 Gaps:68 86.83 372 29.72 8e-25 Signal peptide peptidase-like 1 OS Arabidopsis thaliana GN SPPL1 PE 2 SV 1
rpsblast_cdd gnl|CDD|202947 47 297 + 251 Gaps:37 98.97 291 40.62 1e-66 pfam04258 Peptidase_A22B Signal peptide peptidase. The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080.
rpsblast_cdd gnl|CDD|197847 51 291 + 241 Gaps:25 99.60 249 35.89 2e-46 smart00730 PSN Presenilin signal peptide peptidase family. Presenilin 1 and presenilin 2 are polytopic membrane proteins whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues present in eukaryotes and archaea also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
rpsblast_kog gnl|CDD|37654 1 302 + 302 Gaps:41 94.20 362 43.99 5e-81 KOG2443 KOG2443 KOG2443 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|37653 74 296 + 223 Gaps:33 47.32 541 30.08 5e-32 KOG2442 KOG2442 KOG2442 Uncharacterized conserved protein contains PA domain [General function prediction only].

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 144 163 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 83 87 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 245 267 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 44 62 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 268 272 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 292 304 13 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 111 121 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 164 169 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 51 297 247 PF04258 none Signal peptide peptidase IPR007369
Phobius 234 244 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 139 143 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 4 298 295 PTHR12174 none none IPR007369
Phobius 26 43 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 63 82 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 4 298 295 PTHR12174:SF37 none none none
Phobius 122 138 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 273 291 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 88 110 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 195 213 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 214 233 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 51 292 242 SM00730 none Presenilin, signal peptide peptidase, family IPR006639
Phobius 1 25 25 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 170 194 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

8 Localization

Analysis Start End Length
TMHMM 169 191 22
TMHMM 7 24 17
TMHMM 85 107 22
TMHMM 272 291 19
TMHMM 122 139 17
TMHMM 59 78 19
TMHMM 245 267 22
TMHMM 211 233 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 1 0.957 0.033 NON-PLANT 23