Protein : Qrob_P0252130.2 Q. robur
Protein Identifier  ? Qrob_P0252130.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=1) PTHR12899//PTHR12899:SF4 - 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL // SUBFAMILY NOT NAMED (PTHR12899:SF4) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 127  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10002842mg 1 126 + 126 none 99.21 127 89.68 8e-78 hypothetical protein
blastp_kegg lcl|cit:102612128 1 126 + 126 none 99.21 127 89.68 8e-78 uncharacterized LOC102612128
blastp_kegg lcl|tcc:TCM_042139 1 126 + 126 none 99.21 127 82.54 1e-74 Ribosomal L18p/L5e family protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa021388mg 1 126 + 126 none 99.21 127 84.13 3e-73 hypothetical protein
blastp_kegg lcl|pmum:103325904 1 126 + 126 none 99.21 127 84.13 3e-73 50S ribosomal protein L18 chloroplastic
blastp_kegg lcl|sly:101250475 1 126 + 126 none 98.44 128 81.75 1e-72 50S ribosomal protein L18-like
blastp_kegg lcl|rcu:RCOM_0473010 1 121 + 121 none 93.80 129 85.95 2e-72 hypothetical protein
blastp_kegg lcl|cmo:103501501 1 123 + 123 Gaps:2 96.90 129 85.60 3e-72 50S ribosomal protein L18 chloroplastic
blastp_kegg lcl|fve:101296741 1 126 + 126 Gaps:1 89.29 140 83.20 3e-72 50S ribosomal protein L18-like isoform 1
blastp_kegg lcl|pop:POPTR_0004s22430g 1 125 + 125 none 97.66 128 84.00 3e-72 50S ribosomal family protein
blastp_uniprot_sprot sp|B8E1E9|RL18_DICTD 9 113 + 105 Gaps:13 75.41 122 34.78 4e-07 50S ribosomal protein L18 OS Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|B5YDV9|RL18_DICT6 9 113 + 105 Gaps:13 75.41 122 34.78 4e-07 50S ribosomal protein L18 OS Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|Q5P316|RL18_AROAE 4 113 + 110 Gaps:13 82.91 117 34.02 5e-07 50S ribosomal protein L18 OS Aromatoleum aromaticum (strain EbN1) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|Q7VTB5|RL18_BORPE 4 113 + 110 Gaps:12 83.33 120 31.00 2e-06 50S ribosomal protein L18 OS Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|Q7W2D9|RL18_BORPA 4 113 + 110 Gaps:12 83.33 120 31.00 2e-06 50S ribosomal protein L18 OS Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|Q7WRA7|RL18_BORBR 4 113 + 110 Gaps:12 83.33 120 31.00 2e-06 50S ribosomal protein L18 OS Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|Q1QDH0|RL18_PSYCK 16 113 + 98 Gaps:15 71.55 116 31.33 3e-06 50S ribosomal protein L18 OS Psychrobacter cryohalolentis (strain K5) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|Q4FUE0|RL18_PSYA2 16 113 + 98 Gaps:15 71.55 116 31.33 3e-06 50S ribosomal protein L18 OS Psychrobacter arcticus (strain DSM 17307 / 273-4) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|A0Q4J9|RL18_FRATN 9 113 + 105 Gaps:13 78.63 117 28.26 4e-06 50S ribosomal protein L18 OS Francisella tularensis subsp. novicida (strain U112) GN rplR PE 3 SV 1
blastp_uniprot_sprot sp|A7HM36|RL18_FERNB 6 113 + 108 Gaps:17 77.87 122 34.74 5e-06 50S ribosomal protein L18 OS Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN rplR PE 3 SV 1
rpsblast_cdd gnl|CDD|88603 5 111 + 107 Gaps:13 91.26 103 31.91 5e-10 cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea and as L5e (or L5) in eukaryotes. In bacteria the CP proteins L5 L18 and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit one of the last steps in ribosome assembly. In archaea both L18 and L5 bind 5S rRNA in eukaryotes only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified..
rpsblast_cdd gnl|CDD|177061 4 74 + 71 Gaps:2 63.30 109 34.78 2e-08 CHL00139 rpl18 ribosomal protein L18 Validated.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 5 112 108 PF00861 none Ribosomal L18p/L5e family IPR005484
SUPERFAMILY 4 111 108 SSF53137 none none none
PANTHER 1 120 120 PTHR12899:SF4 none none none
Gene3D 5 113 109 G3DSA:3.30.420.100 none none none
PANTHER 1 120 120 PTHR12899 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 12   Mitochondrion 4 0.199 0.517 NON-PLANT 12